Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02472 ATGTCAGGTTTGTATAATCAGAATTTCTCTCATGCTAGAGCTGCTTCTCCTCAGATTAGAGCCAACTCAGAAGTTGACAGTCAGTATCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGGCCTTTTCTGCAAGTGCTTCCTATATGCAGTCGTCTTTTGAATCAAGAAATATTGAGAGTTTCTGGAATGTTGTCCAACCAAGGTTTTGGCGACTTTGATAGACTGCAGCATAGAAGTCCTAGTCCTATGGCTTCTTCAAACCTCATGTCTAATGTCTCTGCGACAGGAATTGGTGCTTGGAATAGTCTTCAGCAAGAGCAGAGAATAATTGGACCCCCTGGAATGAATATGGACTGGCAAGGTACACCTGCAAGTCCTAGTTCATTCACTGTGAAGAGAATATTGCGCTTGGAAATTCCAGTAGATACATTCCCCAATTTTAATTTTGTTGGAAGACTTCTGGGACCAAGAGGCAATTCTTTGAAACGGGTTGAAGCTACTACTGGTTGTCGCGTGTATATTAGAGGAAAAGGATCGATAAAAGATCCCGACAAGGAAGAAAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAGCCTCTACACATATTGATCGAGGCTGATTTAGCTGCTAATGTTGTTGACTTAAGGCTCAGACAGGCTCAAGAAATCATAGAAGAATTACTCAAACCTGTGGATGAGTCGCAAGACTTTATTAAGAGGCAGCAGTTGCGGGAATTAGCTCTTCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGGCCAAGTGGCAGTGTGTCCCCATTCAATTCAAGTGGAATGAAACGTGCAAAACCGGGTCGTTAA 849 0.4276 MSGLYNQNFSHARAASPQIRANSEVDSQYLSELLAEHQKLGPFLQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLQHRSPSPMASSNLMSNVSATGIGAWNSLQQEQRIIGPPGMNMDWQGTPASPSSFTVKRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLAANVVDLRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKPGR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02472 282 SMART kh_6 132 232 IPR004087 GO:0003676
Vivi6g02472 282 Pfam KH domain 149 185 IPR004088 GO:0003723
Vivi6g02472 282 Gene3D K Homology domain, type 1 19 263 IPR036612 GO:0003723
Vivi6g02472 282 PANTHER RNA-BINDING PROTEIN RELATED 24 275 IPR045071 -
Vivi6g02472 282 MobiDBLite consensus disorder prediction 257 273 - -
Vivi6g02472 282 Pfam Homodimerisation region of STAR domain protein 26 72 IPR032377 -
Vivi6g02472 282 ProSiteProfiles Type-1 KH domain profile. 149 206 - -
Vivi6g02472 282 MobiDBLite consensus disorder prediction 257 282 - -
Vivi6g02472 282 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 257 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02472 Vivi-Chr6 106551971 106556823 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02472 K14945 - gmx:100816420 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02472 6 106551971 106556823 Vivi6g02472 6 106551971 106556823 ECH
Vivi6g02472 6 106551971 106556823 Vivi7g03226 7 97414176 97423332 PCT