Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02440 ATGGAGAAGTTTGGAATATGCATTGCTTTTCTTTTCTTTCTTTTGATTCTAAGTTCTAATGCTTTTAGTTTGGTGGATGAAGAGGCATTAAAGGATGACCAAAATCATGTTGAAAAATCTTTCAGAAATTATTGGAGTGAGATTATGTCGGATATTGAAGACGATGAATGGCAAATGGTACAGACGAAAGGAAACCAATTTGTGGTGAATGATCAACCTTTTTATATAAATGGATTCAACACATATTGGTTGATGATGTTTGCTGCAGATAACTCCACCAGAGGAAAAGTCACTGATGTCTTCAAAGAAGCATCCTCAAAAGGTATGACAGTTTGTCGGACTTGGGCTTTCAATGACGGCCAATGGCGAGCCCTGCAGAAATCCCCTTCAGTTTATGATGAAGATGTTTTCAAGGCATTGGACTTTGTGGTAAGTGAAGCAAAGAAATACAAAATCAGGTTGATATTATCATTGGCTAACAATTGGGAGGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACCCTTAGAAGCTACTATAAGTCTCATGTAAAGACTGTGCTCAATAGAGTTAACACATTCACAAATATCACTTATAAGGAAGATCCTACTATTTTTGCCTGGGAATTGATGAATGAGCCTAGATGCAACTCAGATCCCACAGGTGATAAATTACAGGATTGGATACAAGAAATGGCATTCCATGTGAAGAAAATTGATCCGAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCGACACCGCAGAGACTTCAGTTCAATCCAAATACTTACGCTCAACAGGTTGGAACCGATTTTATCAGGAACCACCAAGTTCTTGGTGTGGACTTTGCTTCTGTTCACATGTATGCTGACTCTTGGGTTTCACCACAAATTTCCGATACACATATCTCATTTGTGAAATCATGGATGGATGCACACATAGAGGATGCTGAAAAGTACCTTGGAATGCCGGTTATTTTTTCTGAGTTTGGTGTATCGTCCAAAGATCCTGGCTACAATTTAACGTATAGAGACACGCTAATAAGCACGGTTTACAGTTCCATCCTAAACTCAACGAAGAAAGGAGGAAGTGGAGCTGGAAGCCTATTGTGGCAGGTTTTTCCTGACGGAACGGATAATATGGATGATGGTTATGCGATTGTTTTGTCAAAATTTCCTTCCACTTCAAGTATTGTATCTCTTCAGTCTTATAGGCTTGGTTTGTTCAACTCCTTGTGTTCTTCCAAATGCCAATGGAGTTGTAAGAAGAAAAGGCTATTGGAGAAGATACTCTTTCACGAAGTATTCTAA 1377 0.3951 MEKFGICIAFLFFLLILSSNAFSLVDEEALKDDQNHVEKSFRNYWSEIMSDIEDDEWQMVQTKGNQFVVNDQPFYINGFNTYWLMMFAADNSTRGKVTDVFKEASSKGMTVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEAKKYKIRLILSLANNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKSHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCNSDPTGDKLQDWIQEMAFHVKKIDPKHLVEIGLEGFYGPSTPQRLQFNPNTYAQQVGTDFIRNHQVLGVDFASVHMYADSWVSPQISDTHISFVKSWMDAHIEDAEKYLGMPVIFSEFGVSSKDPGYNLTYRDTLISTVYSSILNSTKKGGSGAGSLLWQVFPDGTDNMDDGYAIVLSKFPSTSSIVSLQSYRLGLFNSLCSSKCQWSCKKKRLLEKILFHEVF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02440 458 SUPERFAMILY (Trans)glycosidases 60 413 IPR017853 -
Vivi6g02440 458 Pfam Cellulase (glycosyl hydrolase family 5) 70 372 IPR001547 GO:0004553|GO:0071704
Vivi6g02440 458 FunFam Mannan endo-1,4-beta-mannosidase 6 56 432 - -
Vivi6g02440 458 Gene3D Glycosidases 56 431 - -
Vivi6g02440 458 PANTHER - 9 448 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02440 Vivi-Chr6 106031612 106033699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02440 11 456 Glycoside Hydrolase AT5G01930 67.483 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02440 K19355 - gmx:100811794 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02440 6 106031612 106033699 Vivi6g02440 6 106031612 106033699 ECH
Vivi6g02440 6 106031612 106033699 Vivi7g03247 7 97731041 97733838 PCT