Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02390 ATGGAACCCAAGTTCATCAAAACGACGACGTATCAAGATAAACCGAGTTCATCGAAGAATGCTGGTTTGATTGACACTTCAGTTCCATTTGAATCGGTTAAGGAAGCTGTTCATCGCTTCGGAGGTGTTGGTTCCTGGAAATCCTTTCACATTTCTCATTCTTCTAAGCAGCATTGCATAGAAGAGTTTGATACGGAGAAACTGGAGGAGCAGGCGAGAGTGTTGGAGAAAGAACTGAGTCTGAAAGAAAGGGAAACTTTTGATGTATTGAAAGAATTGGATAAGACCAGAAGGCTTGCTGAAGATTTGAAATCGAAGCTGCAGAAGGAAGAATCTGAAGCAAAATTGAATCTTGAAATCAGCGCATGTGATCAAAAATCGGATGTAAAGGAGAATCAATCGGGTCCGTCTGAAGTTGTTTGTCCTATGAAGGAATGTTCGAAGCCTTCTCATGTATCTTCTCCGGCCTTCTCATGTATCTTCTCTGGGAAACTTTTCACATTACTAGATGTAAACGGGTTGAATTTGGTAAACGATGAAGTCAAGCCTGTTTTAAAGCCAACTCTATCAATAGGACAAATACTAAGCAGGAAGCTGTTTAGACCAGAAGAGTATGAAGGGCACGGCGAAAAAGCCTCGGTGAAACGGAAGGTGTCATTAGGTCAGATGCTTGGCAAACACAATGATGATGGTGCATTGATTGATGAGCAAGTCGATAAAGAAAATGATCAGAAGCAGTTTTCTGCTAAGAGAAAGAAATTCGGGTTTGCAAAATTCTCACTTCTTTTGACAAAACAACATAAGAAGAAACCAATGCGGAATATGAGCCAAACACTGGAACACGACACAACAATCCTTGTCGTTTTTCTTTTGTTTCTGGTTTTTTCAACAGTGCCAGTAATCAACATGGAACCCAAGTTCATCAAAACGACGACGTATCAAGATAAACCGAGTTCATCGAAGAATGCGGGTTTGATTGACACTTCAGTTCCATTTGAATCGGTTAAGGAAGCTGTTCATCGCTTCGGAGGTGTTGGTTCCTGGAAATCCTTTCATATTTCTCATTCTTCTAAGCAGCATTGTATAGAAGAGTTTGATACGGAGAAACTGGAGGAGCAGGCGAGAGTGTTGGAGAAAGAACTGAGTCGGAAAGAAAGGGAAACTTTTGATGTATTGAAAGAATTGGATAAGACCAGAAGGCTTGTTGAAGATTTGAAATCGAAGCTGCAGAAGGAAGAATCTGAAGCAAAATTGAATCTTGAAATCAGCACGCGTGATCAAAAATCGGATGTAAAGGAGAATCAATCGAGTCCGTCTGAGGTTGTTTGTCCTATGAAGGAATGTTCGAAGCCTTCTCATGTATCTTCTCCGGGATTAATACTAATGGAATTGAAGCAGGCTAAGTTGAATCTAACGAAAACCACTCATGATTTTGCGGATGTACGAGCTACTGTTGAATCTCTTAATAAGAAATTAGAGAAAGAAAAGATCTCACTTGAGAAAACCCGTGAGAGGTTAACTTTGAATCATTCGAAAATATCTTCTCTCGAAGATGAGCTAAACCAAACCAAATTAAGACTACAAGTTGCAAAAGGTGATGCTTCTGGTAATCCTGTAGATGTCACAATAGAGCTCCAAAAATTGCGTTCCGAGGCCGAGAATTTCAGAAAAGGGAGAGAATCTGCACAATCAGAAGTTTTGAAAACAATGTCTGAGATTGAGCTGACAAGAGCTATGATAAGAACTGCCAAAAGCAGGTTGGTTGCGGCAAAAAAAATGAAGAAAGCTTCAAGAGCTGCAGAAGCTGCTACCCTTGCCGAAATTAATGCATTGTCTAACTCTAACCACAGGGGTTCACCAAGAGAGTGTACGCCAAAGCGGGAGGAAATTACGCTTTCAATGGATGAGTATATTACTCTGACCCGAAAAGCTCGAGACGCTGAGGAACAATCTAAGAAGAGAATAGCAAATGCTAAGCTTGAAGTTGACGAAGCAAGTACATCGCGCATGGAAATTTTGAAAAGGGTAAACGAAGCAACAAAAGAAGCTATAACCGGCAAGAAGGCCCTTGAAGAAGCCCTAGAAAGAGTAACGGCTGCAGATAGAGGGAAGCTAGAAGTTGAAGAGGCTTTAAGAAAGTGGCGATCAGACAGTCACAAAAAGCGTTCTTCGACGAATAATACCTCTACCAAGTTCAAAAACCCTGGTCCATCAAATCAAAGGAGAGATTTCACATTACTTGATGTAAACGGGTTGAATTTGGTAAACGATGAAGTCAAGCCTGTTTTAAAGCCAACTCTATCAATAGGACAAATACTAAGCAGGAAGCTGTTTAGACCAGAAGAGTGCGAAAAAGCCTCGGTGAAACGGAAGGTGTCATTAGGCCAGATGCTTGGCAAACACAATGATGTTGATGGTGCATTGATTGATGAGCAAGTCGATAAAGAAAATGATCAGAAGCAGTTTTCTGCTAAGAGAAAGAAATTCGGGTTTGCAAGATTCTCACTTCTTTTGCCGAAACAGCATAAGAAGAAGAAACCAATGCGGAATTTGAGGTGA 2559 0.408 MEPKFIKTTTYQDKPSSSKNAGLIDTSVPFESVKEAVHRFGGVGSWKSFHISHSSKQHCIEEFDTEKLEEQARVLEKELSLKERETFDVLKELDKTRRLAEDLKSKLQKEESEAKLNLEISACDQKSDVKENQSGPSEVVCPMKECSKPSHVSSPAFSCIFSGKLFTLLDVNGLNLVNDEVKPVLKPTLSIGQILSRKLFRPEEYEGHGEKASVKRKVSLGQMLGKHNDDGALIDEQVDKENDQKQFSAKRKKFGFAKFSLLLTKQHKKKPMRNMSQTLEHDTTILVVFLLFLVFSTVPVINMEPKFIKTTTYQDKPSSSKNAGLIDTSVPFESVKEAVHRFGGVGSWKSFHISHSSKQHCIEEFDTEKLEEQARVLEKELSRKERETFDVLKELDKTRRLVEDLKSKLQKEESEAKLNLEISTRDQKSDVKENQSSPSEVVCPMKECSKPSHVSSPGLILMELKQAKLNLTKTTHDFADVRATVESLNKKLEKEKISLEKTRERLTLNHSKISSLEDELNQTKLRLQVAKGDASGNPVDVTIELQKLRSEAENFRKGRESAQSEVLKTMSEIELTRAMIRTAKSRLVAAKKMKKASRAAEAATLAEINALSNSNHRGSPRECTPKREEITLSMDEYITLTRKARDAEEQSKKRIANAKLEVDEASTSRMEILKRVNEATKEAITGKKALEEALERVTAADRGKLEVEEALRKWRSDSHKKRSSTNNTSTKFKNPGPSNQRRDFTLLDVNGLNLVNDEVKPVLKPTLSIGQILSRKLFRPEECEKASVKRKVSLGQMLGKHNDVDGALIDEQVDKENDQKQFSAKRKKFGFARFSLLLPKQHKKKKPMRNLR 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02390 852 Coils Coil 65 85 - -
Vivi6g02390 852 Coils Coil 90 113 - -
Vivi6g02390 852 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g02390 852 MobiDBLite consensus disorder prediction 420 449 - -
Vivi6g02390 852 Coils Coil 367 387 - -
Vivi6g02390 852 Coils Coil 392 415 - -
Vivi6g02390 852 Coils Coil 482 509 - -
Vivi6g02390 852 Coils Coil 545 565 - -
Vivi6g02390 852 Pfam Weak chloroplast movement under blue light 22 120 IPR008545 -
Vivi6g02390 852 Pfam Weak chloroplast movement under blue light 324 421 IPR008545 -
Vivi6g02390 852 Pfam Weak chloroplast movement under blue light 461 720 IPR008545 -
Vivi6g02390 852 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 22 116 - -
Vivi6g02390 852 Coils Coil 513 533 - -
Vivi6g02390 852 Gene3D - 460 617 - -
Vivi6g02390 852 MobiDBLite consensus disorder prediction 725 742 - -
Vivi6g02390 852 MobiDBLite consensus disorder prediction 713 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02390 Vivi-Chr6 104665980 104671492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02390 - - vvo:131614274 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02390 6 104665980 104671492 Vivi6g02390 6 104665980 104671492 ECH
Vivi6g02390 6 104665980 104671492 Vivi5g00925 5 19979282 19982022 PCT