Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06544 ATGCATAAGCATGGTAGAAAGAAATCTAAGCAATCAAACTCCAAATCTAGTACAGAACATTTACAAAGAACCAGTCCAAGCATTTCACTTCACGGTGGCTCCACTGGCCGTCAACCAGAAGCTTCTCCGGCGACGGGGAGCACCAGTCAATGCGGCATAAACAGCTTTGAGGCTGGGAGCTCTAGCGGTGGCAAGGAAATGTCGAGGTTGGTGCTGAATCCGATCAAGAATCACAAGCCTGAAACGTACGAGGACATGGAATTGGATGTTTCTTCTTTGCTTCTCAGCTCGTTGGAGATGCACCTTCCGAGTTACTTGCTCGGTGCGTCTCGCAAGAACAAAGCTTCATATATGCGCGGTATTTTGCAAGATTACGTGCCTCCAGCATTGCGCTATAGGGATCAAAAGCAAAAAGAATATAGAGAGAAGATAATGTCAAATTATCAGCCTCTGCATCAAGAGTTGTACAGTATTGATCCCATAGCATTCTTTGTGCCAACATTTCTGAAAGCAATTAATGATAATACGGAACAAAGTTTTAGAAGCATAATGTCTGAACCAGCCCCAGGCATTTTTACATTTGAAATGCTTCAACCACGTTTTTGTGAGTTACTGATAACTGAGGTTGAACATTTTGAGAAGTGGGCTGGCAGAACAAAACTCAATGTAATGCGTCCCAATACAATGAATCAATATGGTGCTGTACTAGATGACTTTGGCCTTCAAAACATGCTTAAGAAGCTTATGGAAGATTTTATTTCTCCTTTGTCAAAAGTGTTCTATGCAGAAGTTGGTGGATCAACCCTGGATTCTCATCACGGGTTTATTGTTGAATTTGGTACACATAGAGATGTTGATATGGAGTTCCATGTGGATGACTCTGAAGTTACCTTAAACGTTTGCCTGGGTAGGCAATTTTCTGGAGGAGAGTTGTATTTTCGGGGAATGCGATGCGATAAACATTTAAATACATTGGGTCATTCAGAGGAGATCTTTGATTATTCGCATGTCCCTGGTTGTGCTGTGCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCCACAATTTCTGGTCATCGGGTCAACCTACTTCTGTGGTGCAGAAGTTCAGTTTTTAGAGAAATGCAAAAGTTTAAAAGAGGTTTCTCTAGCTGGTGCGGTGAGTGCAATCAAGAGAAGAAATCCAAGCAAGATAAGCTGCTCACTACCGGAATGGAACTGTTGATGAGGTAA 1233 0.4258 MHKHGRKKSKQSNSKSSTEHLQRTSPSISLHGGSTGRQPEASPATGSTSQCGINSFEAGSSSGGKEMSRLVLNPIKNHKPETYEDMELDVSSLLLSSLEMHLPSYLLGASRKNKASYMRGILQDYVPPALRYRDQKQKEYREKIMSNYQPLHQELYSIDPIAFFVPTFLKAINDNTEQSFRSIMSEPAPGIFTFEMLQPRFCELLITEVEHFEKWAGRTKLNVMRPNTMNQYGAVLDDFGLQNMLKKLMEDFISPLSKVFYAEVGGSTLDSHHGFIVEFGTHRDVDMEFHVDDSEVTLNVCLGRQFSGGELYFRGMRCDKHLNTLGHSEEIFDYSHVPGCAVLHHGRHRHGARATISGHRVNLLLWCRSSVFREMQKFKRGFSSWCGECNQEKKSKQDKLLTTGMELLMR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06544 410 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 270 369 IPR005123 -
Vivi5g06544 410 MobiDBLite consensus disorder prediction 1 66 - -
Vivi5g06544 410 Gene3D q2cbj1_9rhob like domain 190 369 - -
Vivi5g06544 410 SMART p4hc 189 368 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vivi5g06544 410 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 7 399 - -
Vivi5g06544 410 MobiDBLite consensus disorder prediction 15 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06544 Vivi-Chr5 172268077 172272817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06544 - - mtr:11410149 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00314 4 7301026 7306514 Vivi5g06544 5 172268077 172272817 ECH
Vivi5g06544 5 172268077 172272817 Vivi5g06544 5 172268077 172272817 ECH
Vivi5g06544 5 172268077 172272817 Vivi4g00314 4 7301026 7306514 PCT