Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06402 ATGCTATCTTTCCTTTTTCAATTTCTGAATTTCTCAATGAGGACTAGTAGTAAGAATTTGGAACAAGCTTCAGTCAAGTTGTTAAAGTTGAAGGATAACAACAATTCACGGATTTCATTCTTTCTCATTCTCATTTTCATTGCTTGCTTTATTCACAAATGCCTCTTCTCTTTCTCCAATTGGTTCCCACTTGCACTTGCTCTTTGGGCTTCTTCACAATATGGGAATTACCAGAGGAAACTACTTGAGGAGGACTTGAACAAGAAATGGAATCGTATCATAGTCAACACCTCGCCTGTTACAACATTGGAACAATGTGAATGGTTGAATCAACTGTTGACGCAAATTTGGTCCAACTATTTTAATCCTAAGCTCTCAAATAGGTTATCAGCCATAGTAGAGAAACGTTTAAAGCTGCGGAAACCAAGATTTATAGAAAGAGTTGATGTGCAGGAATTTTCACTTGGATCACGCCCTCCCAGTTTGGGCCTTCATGGGGTTAGATGGTCAACCTCTGGTGATCAGCGAGTCCTGAAAATGGGTTTTGATTGGGACACAAGTGAGATGAGCATTTTGATGGTTGCTAAGCTTTCCGTTGGTGCTGCCAGAATTGTGATTAATAGTCTTCATATTAAGGGCGATCTTCTTGTGACACCAATTTTAGATGGAAAAGCACTTTTGTACTCATTCGTATCAACACCTGAGGTTAGAATAGGAATTGCCTTTGGAAGTGGAGGCAGCCAATCCGCCACTGAGTTGCCTGGTGTTTCTCCTTGGCTGGTTAAACTTTTTACTGACACTTTGGTAAAGACCATGGTGGAGCCTAGACGCCGCTGCTTCAGTTTGCCTGTAGTTGATTTAAGGAAACATGTTGTTGGTGGCATGATATATGTTTCAGTGATTTCCGCAAACAGACTTTCTAGGAGTTCCTTCAAGGGGAGGCAACAAAATGGCACAACCAATGACTGTTTAGAAGACAACTTGAGTGACAAGGACTTACAGACATTTATAGAAGTAGAAGCAGAGGAGCTGACAAGGAGAACAGGTGTGAGCCCTGGTTCAGCTCCAAGATGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATAGTTCGCTTCAATCTTTACGAGTGCCCCCCCAACAGTGTGAAGTATGACTACTTAGCATGTTGCGAAGTTAAGATGAAGCACGTGGAGGATGATTCGACAATAGTGTGGGCAATAGGGCCAGATTCTGGTGTAATAGCTAAACATGCAAAACTTTGTGGAGAGGAAGTTGAAATGATTGTCCCATTTGAGGGGACCAACTCAGCAGAGTTAAAGGTGAAAATTGTAGTAAAAGAGTGGCAATTTTCTGATGGTTCTCATAGCATGACCAACCTCAGTGCCAGTTCTCAGAAATCACTAAAGGGATCATCAAATCTTCTTTCAAAAACTGGAAGGAAACTTAAGATAACTGTAGTCGAAGCAAAGGATCTAGCTGCGAGTGACAGATTTGGAAAATTTGACCCTTACGTTAAGTTACAGTATGGAAAGGTTGTTGTGAAAACAAATATTGCTCCCCCTCCTACTACTTCAACTCCTGTCTGGAATGAAACTTTTGAAGTAGATGAGAAAAATGGTGATGAATACCTAATTGTGAAATGCTTTAGTGAAGAAATTTTCGGAGACGAAAACATTGGTAGTGCACATGTAAATTTGGAAGGACTCGTGGAAGGGTCAATCAGGGATGTATGGATCCCACTTGAAGGAGTTAGTTCTGGTGAATTAAGACTTAAAATAGAAGCAATTAGGGTGGACAGCAAAGAGGGATCAAAGGGTCCAGCTTCGGGCACGGCCAATGGTTGGATCGAAATTGTTCTTGTTGAAGCAAGAGATCTTATTGCTGCTGATCTTAGAGGGACAAGTGATCCTTATGTGAGGGTAACCTATGGAAACTTGAAGAAAAGAACAAAGGTTGTACACAAAACTCTGAACCCTCGTTGGGACCAGACCTTAGAGTTCCAAGACGACGGAAGTCCCATGATACTGCATGTTAAAGACCATAATGATTTCCTTCCCACATCATGTATAGGTGAATGTGTTGTAGAATATCAAGGGCTTCCTCCGAACCAAACGTCTGACAAGTGGATACCTCTCCAAGGAGTGAAAAGTGGTGAGATTCACATCCAAATCACAAGAAAAGTTCCAGAGATGCAAACGAGACAGTCTCTAGATTCTGAACATTCTTTGACTAAATTACACAAGATTCCTAGCCAGATAAAGGAGATGACGAAAAAGATACGGTGTTTAATAGAGGAAGGAAATCTGGAAGAGTTGTCTACAAGTTTGAGCGAGTTACAAACTCTAGAGGATACACAAGAAGGATATATAGCCCAGTTGGAGACCGAACAAATGCTTCTCATCAGCAAAATAAATGAACTCGGCAAAGAGATCATCAAGTCTTCTTCTTCTTCTTCTCTTAGCAGAAGTGGAAATTGA 2487 0.4089 MLSFLFQFLNFSMRTSSKNLEQASVKLLKLKDNNNSRISFFLILIFIACFIHKCLFSFSNWFPLALALWASSQYGNYQRKLLEEDLNKKWNRIIVNTSPVTTLEQCEWLNQLLTQIWSNYFNPKLSNRLSAIVEKRLKLRKPRFIERVDVQEFSLGSRPPSLGLHGVRWSTSGDQRVLKMGFDWDTSEMSILMVAKLSVGAARIVINSLHIKGDLLVTPILDGKALLYSFVSTPEVRIGIAFGSGGSQSATELPGVSPWLVKLFTDTLVKTMVEPRRRCFSLPVVDLRKHVVGGMIYVSVISANRLSRSSFKGRQQNGTTNDCLEDNLSDKDLQTFIEVEAEELTRRTGVSPGSAPRWDTTFNMVLHDNTGIVRFNLYECPPNSVKYDYLACCEVKMKHVEDDSTIVWAIGPDSGVIAKHAKLCGEEVEMIVPFEGTNSAELKVKIVVKEWQFSDGSHSMTNLSASSQKSLKGSSNLLSKTGRKLKITVVEAKDLAASDRFGKFDPYVKLQYGKVVVKTNIAPPPTTSTPVWNETFEVDEKNGDEYLIVKCFSEEIFGDENIGSAHVNLEGLVEGSIRDVWIPLEGVSSGELRLKIEAIRVDSKEGSKGPASGTANGWIEIVLVEARDLIAADLRGTSDPYVRVTYGNLKKRTKVVHKTLNPRWDQTLEFQDDGSPMILHVKDHNDFLPTSCIGECVVEYQGLPPNQTSDKWIPLQGVKSGEIHIQITRKVPEMQTRQSLDSEHSLTKLHKIPSQIKEMTKKIRCLIEEGNLEELSTSLSELQTLEDTQEGYIAQLETEQMLLISKINELGKEIIKSSSSSSLSRSGN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06402 828 CDD C2 619 715 - -
Vivi5g06402 828 Coils Coil 793 813 - -
Vivi5g06402 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 102 283 IPR031468 GO:0008289
Vivi5g06402 828 ProSiteProfiles C2 domain profile. 600 713 IPR000008 -
Vivi5g06402 828 Pfam C2 domain 296 402 IPR000008 -
Vivi5g06402 828 Pfam C2 domain 484 584 IPR000008 -
Vivi5g06402 828 Pfam C2 domain 619 715 IPR000008 -
Vivi5g06402 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 615 728 IPR035892 -
Vivi5g06402 828 Gene3D C2 domain 464 602 IPR035892 -
Vivi5g06402 828 Gene3D C2 domain 608 730 IPR035892 -
Vivi5g06402 828 SMART C2_3c 484 581 IPR000008 -
Vivi5g06402 828 SMART C2_3c 618 712 IPR000008 -
Vivi5g06402 828 SMART C2_3c 295 409 IPR000008 -
Vivi5g06402 828 ProSiteProfiles C2 domain profile. 463 582 IPR000008 -
Vivi5g06402 828 PANTHER OS01G0128800 PROTEIN 17 825 - -
Vivi5g06402 828 CDD SMP_SF 125 280 - -
Vivi5g06402 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 598 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06402 Vivi-Chr5 170589573 170594772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06402 621 727 Lipid Metabolism Gene Families AT3G61300 28.947 2.79e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06402 - - ccaj:109803570 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00202 4 3564342 3569018 Vivi5g06402 5 170589573 170594772 ECH
Vivi5g06402 5 170589573 170594772 Vivi5g06402 5 170589573 170594772 ECH
Vivi5g06402 5 170589573 170594772 Vivi4g00202 4 3564342 3569018 PCT