Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00202 ATGAGCAGAAAGAAAAGTGTATTTTCCATTGAAAATATTGAAGATGTTTCTGTGGATTTCTTCAACCATCTTTTGCAGGAGAAGCCAAAGATTCCATTTTTCATTCCATTTATTTTGATTGCTTTGGTTATTGAGAAATGGGTCTTCTCTTTCTCTACTTGGGTTCCTCTTGCACTTGCTGTTTGGGCAACTATGCAGTATGGGAGATACCAACGGAAACTACTCGTGGAGGATTTGGATAAGAAATGGAAGCGAATAATATTGAATAACTCGCCCATCACACCATTGGAGCACTGTGAATGGCTGAATAAATTGTTGACTGAAATCTGGCCCAACTATTTTAGCCCCAAGCTTTCATCAAGATTAAAAGCTATAGTTGAGAAGCGTTTAAAACTCCGGAAACCAAGACTTCTTGAAAGAGTTGAGCTGCAGGAGTTTTCGCTAGGATCATGTCCTCCTAGCTTGGCCTTGCAAGGGATGCGGTGGTCAACTATCGGCGATCAGCGAGTCATGCAACTTGGTTTAGATTGGGACACCAATGAAATGAGTATTTTGATGCTTGCTAAGCTTGCGAAACCATTGATGGGAACTGCACGAATCGTCATTAACGCTCTTCATATCAAGGGTGATCTTATCTTAACGCCGATTCTAGATGGAAAAGCACTGTTATATTCATTTGTTTCGGCTCCTGAGGTGAGAGTAGGAGTTGCCTTTGGAAGTGGTGGAAGTCAGTCACTTCCAGCTACTGAGTGGCCTGGTGTTTCTTCCTGGCTGGAAAAGCTTTTTACTGACACGTTGGTTAAAACCATGGTGGAACCTCGACGGCGATGCTTCACTTTGCCTGCTGTTGATTTAAGAAAAAAGGCGGTTGGAGCGATCATATATGTTAGAGTGATTTCCGCAAATAAACTTTCTTGGAGTTCATTCAAGACATCTAGGAGGCAACAAAATGGAACAAACAGTTGTTCTTCTTCGTCAGAGGACTTTTTCGACGACAATGACCTACATACATTTGTAGAGGTAGAAATCGAGGAATTAACGAGGAGAACGGACATCAGACTAGGTTCAACGCCTAGATGGGATGCACCGTTTAATATGGTTATGCATGATAATTCAGGAACTATTCGTTTCAATCTTTACGAGTGTATTCCAAACAATGTGAAGTGCGACTATCTAGGAAGTTGTGAAATAAAGCTGCGGCATGTTGAAGATGATTCGACAGTAATGTGGGCGGTAGGACCAGATTCCGGGGTTATTGCAAGGAGAGCGCAAATTTGTGGCGACGAAATTGAAATGATTGTCCCATTTGAGGGTGCCAACTGTGGAGAGTTGAAGGTGAGCATTGTAGTAAAAGAGTGGCAATTTTCGGATGGAACACATAGCTTGAACAAACTCCGTAACAACTCTCAGCCGTCGCTAAATGGATCATCGAACCTCCAGTTCAAAACTGGAAAGAAACTTAACATAACTGTTATGGAAGGAAAGGATCTTGCTGCGGGAAAAGATAAATACGGAAAATTTGATTCATACATTAAATTGCAATACGGAAAGGTTATTCAGAAAACAAAGACTTCTCATAGTCCAAATCCTGTCTGGAATCAGGCGTATGAATTCGATGAGATTGGCGGTGGCGAATACTTAAAACTAAAAGTTTTTACTGAGGAACTTTTCGGAGACGAAAACATTGGTAGTGCACAAGTAAATTTGGAAGGATTGGTTGATGGATCAGTCAGGGATGTATGGATTCCTCTTGAAAGAGTGCGTTCCGGAGAAGTAAGACTTAAAATAGAAGCCGTAAAAGCTGATGACCAAGAAGGATCAATGCGTTCAGGCTCGGGAAATGGTTGGATAGAACTTGTTCTGATAGAAGGAAGAGATTTAGTTGCCGCGGATCTCAGAGGCACAAGTGATCCGTATGTTAGGGTACACTACGGAAACTTCAAGAAAAGAACGAAGGTTATATACAAAACTCTAACCCCTCAATGGAACCAGACCCTGGAGTTCCCTGATGATGGAAGTCCTTTAATACTTTATGTGAAAGACTATAATGCATTACTACCTACATCAAGTATCGGCGAATGTGTCGTAGAATATCAAAGGTTACCTCCAAACCAAATGGCTGATAAGTGGATACCTCTTCAAGGAGTGAAAAGAGGTGAAATTCACATTCAAATTACTAGAAAAGTTCCAGAGATGCAAAGGAGGCAAAGTATAAACTCCAAACCTTCATTAAGTAAATTACACCAAATTCCGACGCAGATAAAACAGATGATGATTAAGTTCAGGTCATTGATAGAAGACGGAAACCTTGAAGGACTCTCTGCAACATTGAGTGAGCTAGAAACTCTAGAGGATATACAAGAAGGATATGTAGCTCAGCTGGAAACTGACCAAATGCTTCTTTTCAGCAAAATAAAGGAGCTTGGCCAAGAGATTATCAATTCTTCTCCTTCCTTAAGCAGAAGAAATTCTGAAAGTGCCAACTAA 2487 0.4097 MSRKKSVFSIENIEDVSVDFFNHLLQEKPKIPFFIPFILIALVIEKWVFSFSTWVPLALAVWATMQYGRYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFSPKLSSRLKAIVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGLDWDTNEMSILMLAKLAKPLMGTARIVINALHIKGDLILTPILDGKALLYSFVSAPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGAIIYVRVISANKLSWSSFKTSRRQQNGTNSCSSSSEDFFDDNDLHTFVEVEIEELTRRTDIRLGSTPRWDAPFNMVMHDNSGTIRFNLYECIPNNVKCDYLGSCEIKLRHVEDDSTVMWAVGPDSGVIARRAQICGDEIEMIVPFEGANCGELKVSIVVKEWQFSDGTHSLNKLRNNSQPSLNGSSNLQFKTGKKLNITVMEGKDLAAGKDKYGKFDSYIKLQYGKVIQKTKTSHSPNPVWNQAYEFDEIGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEVRLKIEAVKADDQEGSMRSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLTPQWNQTLEFPDDGSPLILYVKDYNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPEMQRRQSINSKPSLSKLHQIPTQIKQMMIKFRSLIEDGNLEGLSATLSELETLEDIQEGYVAQLETDQMLLFSKIKELGQEIINSSPSLSRRNSESAN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00202 828 Gene3D C2 domain 284 413 IPR035892 -
Vivi4g00202 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 328 408 IPR035892 -
Vivi4g00202 828 PANTHER OS01G0128800 PROTEIN 8 824 - -
Vivi4g00202 828 CDD SMP_SF 118 278 - -
Vivi4g00202 828 ProSiteProfiles C2 domain profile. 467 582 IPR000008 -
Vivi4g00202 828 Gene3D C2 domain 601 728 IPR035892 -
Vivi4g00202 828 Gene3D C2 domain 474 600 IPR035892 -
Vivi4g00202 828 CDD C2 617 713 - -
Vivi4g00202 828 ProSiteProfiles C2 domain profile. 588 711 IPR000008 -
Vivi4g00202 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 486 598 IPR035892 -
Vivi4g00202 828 Pfam C2 domain 486 584 IPR000008 -
Vivi4g00202 828 Pfam C2 domain 617 713 IPR000008 -
Vivi4g00202 828 Pfam C2 domain 294 405 IPR000008 -
Vivi4g00202 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 608 726 IPR035892 -
Vivi4g00202 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 281 IPR031468 GO:0008289
Vivi4g00202 828 SMART C2_3c 486 581 IPR000008 -
Vivi4g00202 828 SMART C2_3c 616 710 IPR000008 -
Vivi4g00202 828 SMART C2_3c 293 411 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00202 Vivi-Chr4 3564342 3569018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00202 335 759 Lipid Metabolism Gene Families AT3G61300 23.967 6.03e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00202 - - gmx:100807475 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00202 4 3564342 3569018 Vivi5g06402 5 170589573 170594772 ECH
Vivi4g00202 4 3564342 3569018 Vivi4g00202 4 3564342 3569018 ECH
Vivi5g06402 5 170589573 170594772 Vivi4g00202 4 3564342 3569018 PCT