Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06398 ATGCTATGTCCCAAACAACATGTTCTTCTTAAACTCTTCAACAATGTCTCTTCCTCTTTCCAACTTCTCTTCTTGCTACTCTTTTCTATTGCCATTTTTCTTCTCACTTTCTTAACCTTCACCGGTCGATTCCCCTTAATCCAAAGGGATCAAGAATATGAATATGTGTTTTCGGACGATGAAGAAGAGGAGGAGGAAGAAGAAGACGATGAAGAAACTCAAGAGAATTATTCTTGTGTTGTTTCGTGTGACAAGGTAGAGCGTCGAATGACTCATTCTAGTCATTCTGAAGAGTTCATTACTCCGCGAGAGAGTTTCGTTGAAGACTTAGAAGAAAATGTTTGTTATGAAACATTGTCTATTCATAACTCGCCACAAGTTTCTCATTTTGAAAACGAAGGGACTAAAGCGTTTCGAGAAGAATTTCAATCGAGAAATGTTGTTGATTCTGTTCCAAGTTATGTTCAATTTGAAAGTAGTCCAACCTCTTCCATGATCAACTTGAACCTATACAAAAGTAACAAAAACTATAAAGATGATCAAGTTGGTGTTGGAATAATTAAAAATAAAAAAGTGCAAGAAACAAGCCAAACTAGGGATGAGAGATTCTTTGTTTTTCCTTCTAAGCAATTGAATAGTAAGAAGATGATTGTTGATGAAGAGAAAGATAATGATGATGATGATGATGATGATTCTTGCTCCTCTTATGAATACAGAAGCTCAATTCATAGCAGGGATTCAGCAACAGATGATGAATTTTCTGCTTCATCTAGAAGAAGTTGTCCTAAGTGGGAATCATATACTTTGTTTGAAAAATATGATGAAGAAAATGCATTCTTAGACCGAATTAATGCGCAAAACAAACTTCACGAAACCGAGTCTTTAAGATCAATCAAAATGTCACCAAGATCGATATCAGAGCGAATTGCGAGCAAGTTTTCGACTATAAACAAAAAGCCGACCGACGTAGGTCATAATCCATATCATGAACTAGAGGCTGCATATGTTGCGCAAATTTGCTTAACATGGGAAGCTCTTAGTTGGAACTACATAAATTTTCGTTCCAAACACGCGTCACAATCGCGACATAATCTCGATGTCGGCTGTTCTGCATTGATTGCACAACAATTTCAGCAGTTTCAGGTTTTGTTGCAGAGATACATAGAGAATGAGCCTTATGAGCATGGCAGAAGACCTGAAATCTATGCTAGAATGAGACTTCTAGCACCAAAGTTGCTCCTAGTGCCCGAATATCACGATTCAGAGGAAAATCAGATGGAAAGTGATTTGATATCTTCAGCTTCATTTCTTAAGATAATGGAAGGTGGGATCAACACATTCATGAATTTTCTGAAAGCTGATAAAGAAAAATCATGTGAGATCCTAACACATTACTTTAGGAGAAGCAAAAGAAGCATGGTTGATCCAACACTACTCAAGCTAATGAAGAAAGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATATAAGCCATTCAGGAAAAGGATTGAAAAGGAGAAAGTTAAAGGTGGAAGAAGAGATTGAAATGTTAATGGCACTAATAGACTTAAAAGTGGTGTCAAGGGTATTGAGAATGGAAGAATTAAGTGAAGAAAAATTGCATTGGTGTGAAAAAAAGATGAGTAAAGTGAGAGTTGTGCAAGGGAAACTTTGTAGGGATTATTCAACTCCACTTTTCTTTCCTTCAAATTGA 1713 0.3649 MLCPKQHVLLKLFNNVSSSFQLLFLLLFSIAIFLLTFLTFTGRFPLIQRDQEYEYVFSDDEEEEEEEEDDEETQENYSCVVSCDKVERRMTHSSHSEEFITPRESFVEDLEENVCYETLSIHNSPQVSHFENEGTKAFREEFQSRNVVDSVPSYVQFESSPTSSMINLNLYKSNKNYKDDQVGVGIIKNKKVQETSQTRDERFFVFPSKQLNSKKMIVDEEKDNDDDDDDDSCSSYEYRSSIHSRDSATDDEFSASSRRSCPKWESYTLFEKYDEENAFLDRINAQNKLHETESLRSIKMSPRSISERIASKFSTINKKPTDVGHNPYHELEAAYVAQICLTWEALSWNYINFRSKHASQSRHNLDVGCSALIAQQFQQFQVLLQRYIENEPYEHGRRPEIYARMRLLAPKLLLVPEYHDSEENQMESDLISSASFLKIMEGGINTFMNFLKADKEKSCEILTHYFRRSKRSMVDPTLLKLMKKVNQKKRVKVKDISHSGKGLKRRKLKVEEEIEMLMALIDLKVVSRVLRMEELSEEKLHWCEKKMSKVRVVQGKLCRDYSTPLFFPSN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06398 570 PANTHER DNA LIGASE (DUF1666)-RELATED 12 569 - -
Vivi5g06398 570 MobiDBLite consensus disorder prediction 215 255 - -
Vivi5g06398 570 Pfam Protein of unknown function (DUF1666) 330 568 IPR012870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06398 Vivi-Chr5 170548174 170551229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06398 - - gmx:100776190 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06398 5 170548174 170551229 Vivi5g06398 5 170548174 170551229 ECH
Vivi5g06398 5 170548174 170551229 Vivi4g00194 4 3499704 3504333 PCT