Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06068 ATGTCGGTTGCTTTGAGTTCAATTTCGAAAGAGAGGGTATATTGGGAGGGTCAACCAGAACATTGTTCTGTTGATCCAATCCTGATATACCTTACTGTGGATAGTGTTGTTACCCCGATGCGGGTTTTGGAGTCGGATTCAATTGCTTCTGTGAAATTGAGGATTCAACAATGTAAAGGTTTTGTGGTGAAGAAACAGAAGCTTGTTTTTGGTGGCAGGGAGCTTGCGCGGAATGATACACTTATTAAGGAGTATGGTGTTGCTGAAGGCAATGTTCTTCATTTGGTTTTGCGTCTTTCGGATCTTCTTTTCATTGTTGTTAGGACAGTTTCTGGTAAGGAGTTTGAGTTTCATGTTGATAGGCATAGGAATGTGGGGTATCTTAAACAAAGGATTAGGAAAAAAGGGGAAGGTTTTATTGATCTTGAGGAGCAAGAGCTTTTTTGTAATGAAGAGAGGCTAGATGATCAGATACTTTTTCATGATATATGTAAAGGGGGTGATGGTGTAGTGCATTTGATTATTAAGAAATCGGTTAAGGTTAGGGCTACGCCTATTCATAATGATTTGAATCTTTCTCTTGAGGCTTTGATACCGCGTGAGAGAAGTGATGTGTTACAATTACAAGTAGAAGAGAATAAGAATAGGAGCAGACCGATTCAGATAGCAAAGTTACCACCCGGTGTTGGTTTCTGGTTGGAGCCTATTGCGTTGAATCCCAAGATCAATTTTTTGCCTTTCCTTTCGGACATGATTAACTCCACATATGAGGGTTTGAAGAAAGGAAATCGTCCTATTAGGTCCTCGGAAGGAACGGGAGGGACTTATTTTATGCAAAATTCGACTGGCCAGGAGCGTGTTTCAGTATTCAAGCCCTTGGATGAGGAACCAATGGCTGTGAACAACCCAAGAGGCTTACCGTGTTCATTGAACGGCGAAGGTTTAAAAAGAGGAACAAGGGTGGGAGAAGGAGCCTTAAGGGAGGTAGCAGCATATGTATTAGATCATCCAAGGAGCGGGCCACGTTTGGTGTCAGGTGAGGAAATCGGGTTCTCTGGTGTTCCTCCTACTGTTATGGTGCAATGCTTACACCAAGAATTTCACCACCCAAATGGGTACGCATGCTCATCAAAACACATCAAGATTGGGTCGTTACAGAAATTTATGAATAACGATGGAAACTGTGAGGACATTGGACCCGGGGTCTTTCCAGTGGAGGAAGTGCATAAGATAACTGTGCTTGATATAAGAATGGCCAATGCTGACAGACATGCTGGGAATATTTTGTTCAGAAAGGAGGCAGCTGGCCAGGTTAAGCTCATTCCCATTGATCATGGTTATTGTCTACCAGATAAATTTGAAGACTGCACATTTGATTGGCTTTACTGGCCGCAAGCACTCCAGCCTTACTCAGCTGAGACAGTTGATTATATCAATTCTTTGGATGCCGAAAAAGACATTGAAATTTTGAAATATTATGGATGGGATATTCCACAGGAGTGTGCGCGTACACTTCGCGTTTCTACAATGCTGCTCAAGAAAGGCGTTGAGAGAGGTTTAACTCCCTATGCTATTGGAAGCATCATGTGTCGGGAAAATTTGAACAAGGAATCTGTAATTGAGGAAATCATAAGCGAAGCACAAGATTCCTTGCTTCCTGGCATGAAGGAATCAGCATTTCTTGATACCGTCTCCCAAATCATGGATTCCCGTCTTGATAAGCTTGCACAATAG 1734 0.4239 MSVALSSISKERVYWEGQPEHCSVDPILIYLTVDSVVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFGGRELARNDTLIKEYGVAEGNVLHLVLRLSDLLFIVVRTVSGKEFEFHVDRHRNVGYLKQRIRKKGEGFIDLEEQELFCNEERLDDQILFHDICKGGDGVVHLIIKKSVKVRATPIHNDLNLSLEALIPRERSDVLQLQVEENKNRSRPIQIAKLPPGVGFWLEPIALNPKINFLPFLSDMINSTYEGLKKGNRPIRSSEGTGGTYFMQNSTGQERVSVFKPLDEEPMAVNNPRGLPCSLNGEGLKRGTRVGEGALREVAAYVLDHPRSGPRLVSGEEIGFSGVPPTVMVQCLHQEFHHPNGYACSSKHIKIGSLQKFMNNDGNCEDIGPGVFPVEEVHKITVLDIRMANADRHAGNILFRKEAAGQVKLIPIDHGYCLPDKFEDCTFDWLYWPQALQPYSAETVDYINSLDAEKDIEILKYYGWDIPQECARTLRVSTMLLKKGVERGLTPYAIGSIMCRENLNKESVIEEIISEAQDSLLPGMKESAFLDTVSQIMDSRLDKLAQ 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06068 577 ProSiteProfiles Ubiquitin domain profile. 29 98 IPR000626 GO:0005515
Vivi5g06068 577 Pfam Phosphatidylinositol 3- and 4-kinase 271 524 IPR000403 -
Vivi5g06068 577 ProSiteProfiles Ubiquitin domain profile. 103 177 IPR000626 GO:0005515
Vivi5g06068 577 SUPERFAMILY Ubiquitin-like 37 100 IPR029071 -
Vivi5g06068 577 SUPERFAMILY Protein kinase-like (PK-like) 418 575 IPR011009 -
Vivi5g06068 577 Pfam Ubiquitin family 35 99 IPR000626 GO:0005515
Vivi5g06068 577 Gene3D - 30 100 - -
Vivi5g06068 577 CDD Ubl_ubiquitin_like 105 174 - -
Vivi5g06068 577 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 36 550 IPR044571 -
Vivi5g06068 577 Gene3D - 104 189 - -
Vivi5g06068 577 FunFam Phosphatidylinositol 4-kinase gamma 4 24 103 - -
Vivi5g06068 577 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 262 559 IPR000403 -
Vivi5g06068 577 SUPERFAMILY Ubiquitin-like 99 177 IPR029071 -
Vivi5g06068 577 SMART ubq_7 103 176 IPR000626 GO:0005515
Vivi5g06068 577 SMART ubq_7 27 98 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06068 Vivi-Chr5 165751071 165754059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06068 2 576 Acyl Lipid Metabolism Gene Families AT5G24240 56.477 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06068 - - gmx:100809172 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03970 2 152372345 152375656 Vivi5g06068 5 165751071 165754059 PCT