Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05969 ATGGGAGTGATGAACTTGGATCAACCACAATTGTTGTCAAAGATTGCAATTGGTGATGGCCATGGTGAATCATCATCTTACTTTGATGGATGGAAAGCCTATGACAAAGATCCTTTTCATCCATCCAAAAATCCCAATGGAGTCATCCAAATGGGTCTTGCAGAGAATCAGCTTACTGCTGATTTGGTTCAAAACTGGATAATGGATAATCCAGAAGCTTCAATTTGTACCCTAGAAGGAGTTCATAATTTCAAACATATGGCCAATTTTCAGGATTATCATGGTTTACCAGAGTTCAGAAACGCTGTGGCGAAATTCATGGCAAGAACAAGAGGAAACAGAGTGACATTTGATCCCGATCGGATCGTGATGAGCGGCGGAGCAACCGGAGCTCATGAGGCTACGGCGTTTTGTTTGGCCAATCCTGGTGAAGGCTTTTTGGTGCCTACTCCTTATTATCCAGGTTTTGATAGAGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTGTCTGTGAAAGCTCAAACAATTTCAAATTAACCAAACAAGCCTTAGAAGAAGCTTATGAAAAAGCCAAAGAAGATAACATCACAATAAAAGGTTTACTCATCACAAATCCATCAAATCCTTTAGGCACTGTCATGGACAGAACCACATTAAGAACTGTCATCAGTTTCATCAACGAAAAGCGTATCCACCTAATCAGCGACGAAATTTACGCTGCAACGGTTTTTAGCCACCCGAGTTTCATAAGCATAGCTGAGATAATAGAACACGACACAGACATTGAATGCGACCGTGACCTCATTCACATAGTTTATAGTCTTTCAAAAGACATGGGATTCCCAGGGTTTAGAGTTGGAATAATATACTCATACAATGATACTGTCGTTGACTGCGCGCGCAAAATGTCGAGTTTTGGACTAGTTTCAACACAGACACAGTACCTGATGGCGAAAATGCTGTCTGACGATGACTTCGTTGAGAAATTTCTTGCTGAGAGTGCGAAGAGGTTAGCACAAAGGTACAGAGTTTTCACTGGCGGACTAATCAAAGTCGGAATCAAGTGTTTACAGAGTAACGGTGGACTTTTCGTGTGGATGGATTTAAGAGGACTTCTTAAGAACGCTACATTCGAATCCGAACTCGAACTATGGAGAGTGATTATTCATAAAGTTAAGATCAATGTTTCGCCCGGTGTTTCATTTCATTGTTCTGAGCCAGGTTGGTTTAGAGTGTGCTATGCTAACATGGATGATAGAGATGTGCAAATTGCATTACAAAGGATTAGATCATTTGTGACTCAGAATCACAAAGAGGCTATGGTTTCTGAGAAGAATTCTAAACCATGCTGGCATAGTAATTTGAGGTTGAGCCTTAAATCAAGAAGGTTTGATGATATTATGATGTCACCTCATTCTCCAATTGCTCAATCACCTCTTGTGAAAGCTACTACTTGA 1464 0.4064 MGVMNLDQPQLLSKIAIGDGHGESSSYFDGWKAYDKDPFHPSKNPNGVIQMGLAENQLTADLVQNWIMDNPEASICTLEGVHNFKHMANFQDYHGLPEFRNAVAKFMARTRGNRVTFDPDRIVMSGGATGAHEATAFCLANPGEGFLVPTPYYPGFDRDLRWRTGVKLVPVVCESSNNFKLTKQALEEAYEKAKEDNITIKGLLITNPSNPLGTVMDRTTLRTVISFINEKRIHLISDEIYAATVFSHPSFISIAEIIEHDTDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDTVVDCARKMSSFGLVSTQTQYLMAKMLSDDDFVEKFLAESAKRLAQRYRVFTGGLIKVGIKCLQSNGGLFVWMDLRGLLKNATFESELELWRVIIHKVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALQRIRSFVTQNHKEAMVSEKNSKPCWHSNLRLSLKSRRFDDIMMSPHSPIAQSPLVKATT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Vivi5g05969 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Vivi5g05969 487 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 16 436 - -
Vivi5g05969 487 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vivi5g05969 487 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Vivi5g05969 487 Coils Coil 176 196 - -
Vivi5g05969 487 CDD AAT_like 89 432 - -
Vivi5g05969 487 Gene3D - 71 325 IPR015421 GO:0003824
Vivi5g05969 487 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 71 325 - -
Vivi5g05969 487 SUPERFAMILY PLP-dependent transferases 22 435 IPR015424 -
Vivi5g05969 487 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05969 Vivi-Chr5 164052023 164054458 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05969 K20772 - gmx:547976 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03908 2 151195178 151197922 Vivi5g05969 5 164052023 164054458 PCT