Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03908 ATGGAATATCATAATATAATGGAGCAACCTCAATTACTATCTAAGATAGCCACAGGCAATGGACATGGTGAAAATTCACCATACTTTGATGGATGGAAAGCTTATGAAAATGATCCTTTTCATCCCACAAATAATCCTAATGGAGTTATCCAAATGGGTCTTGCAGAAAATCAGCTTGCTTCTGATTTGGTTGAAAATTGGATAACAAGTAATCCAGAGGCTTCAATTTGCACTTCTGAAGGTGTAAATCAATTCAAAGCCATGGCCAATTTTCAGGATTATCATGGTTTGCCACAGTTTAGACAAGCTGTGGCTAAATTCATGAGAAGAACAAGAGGGAATAAAGTTTCTTTCGATCCGGACCGCATTGTTATGAGCGGCGGAGCAACCGGAGCACATGAGGTTATGGCCTTTTGTTTAGCAGATCCGGGTGATGCATTTTTGGTGCCAACCCCTTATTATGCAGGTTTTGATAGAGATTTAAAGTGGAGAACAGGAGTTCAACTTGTTCCGGTCATTTGTAAAAGCTCTAATAATTTCAAGCTAACAAAACAAGCTTTACAATCTGCGTTTGATAAAGCTAAAGAAGACAACATCAAAATAAAAGGGTTACTTATTACAAATCCATCGAACCCTTTAGGAACAATCATGGACAAAGAAACCCTAGAAACATTGGTGAGTTTCATCAACGAAAAACAAATACACTTAATAAGTGATGAAATATATGCTGCAACAGTTTTTTGCCACCCAAGTTTCACAAGCATAGCTGAGATAATAGAACAAGACACAAACATGGAATATAACCGTAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATCTAGGGTTTCCCGGTTTTAGAGTTGGTATAATATATTCATACAATGATGAAGTTGTTGAATGTGCTAGAAAAATGTCGAGTTTTGGATTAGTTTCGTCGCAGACACAATATCTTATTGCATCAATGTTATCTGATGAAGAGTTTGTGGAAAAGTTTGTAGTAGAAAGTGCAAAGAGGCTTGCTAAAAGGTATGGAATATTTTGTAGAGGTTTGGCACAAGTTGGTATAAAGTGTTTGCAAAGTAATGCTGGTCTTTTTTTATGGATGGACTTGAGGTGTCTTCTTAAGGAACAAACATTTGAAGAAGAAATGAAGCTTTGGAAAGTGATTATTGATCAAGTTAAGATTAATATATCTCCTGGTTGTTCTTTTCATTGTTGCGAACCGGGGTGGTTTAGGGTTTGTTATGCGAATATGGATGATCGAGATGTTGAAGTTTCTTTGACACGAATTCGGGCATTTGTGAGGCGAAACAAGGATGAAATAGTGGCCAAGAAGAATCCTTGTAGTCGGAGAAACTTGAGGCTAAGCTTTTCGGTAAGAAGTTTGGATGATTTTTTGGTGTCACCTCATTCTTCTATTACTCATTCACCTATTGTGAAAGCCACTACTTGCTAA 1461 0.371 MEYHNIMEQPQLLSKIATGNGHGENSPYFDGWKAYENDPFHPTNNPNGVIQMGLAENQLASDLVENWITSNPEASICTSEGVNQFKAMANFQDYHGLPQFRQAVAKFMRRTRGNKVSFDPDRIVMSGGATGAHEVMAFCLADPGDAFLVPTPYYAGFDRDLKWRTGVQLVPVICKSSNNFKLTKQALQSAFDKAKEDNIKIKGLLITNPSNPLGTIMDKETLETLVSFINEKQIHLISDEIYAATVFCHPSFTSIAEIIEQDTNMEYNRNLVHIVYSLSKDLGFPGFRVGIIYSYNDEVVECARKMSSFGLVSSQTQYLIASMLSDEEFVEKFVVESAKRLAKRYGIFCRGLAQVGIKCLQSNAGLFLWMDLRCLLKEQTFEEEMKLWKVIIDQVKINISPGCSFHCCEPGWFRVCYANMDDRDVEVSLTRIRAFVRRNKDEIVAKKNPCSRRNLRLSFSVRSLDDFLVSPHSSITHSPIVKATTC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03908 486 Pfam Aminotransferase class I and II 50 432 IPR004839 GO:0009058|GO:0030170
Vivi2g03908 486 Gene3D - 72 326 IPR015421 GO:0003824
Vivi2g03908 486 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 13 438 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 142 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 165 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 303 326 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 198 222 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 234 257 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 271 295 - -
Vivi2g03908 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 85 101 - -
Vivi2g03908 486 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 277 290 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vivi2g03908 486 CDD AAT_like 90 434 - -
Vivi2g03908 486 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 72 326 - -
Vivi2g03908 486 SUPERFAMILY PLP-dependent transferases 22 438 IPR015424 -
Vivi2g03908 486 Gene3D Aspartate Aminotransferase, domain 1 38 431 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03908 Vivi-Chr2 151195178 151197922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03908 K20772 - gmx:100793020 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03908 2 151195178 151197922 Vivi2g03908 2 151195178 151197922 ECH
Vivi2g03908 2 151195178 151197922 Vivi5g05969 5 164052023 164054458 PCT