LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g05781	ATGGGAGAGGAAGAAAAGAAACCTGAAGAAACTAAAGTGGAGGAGAAAAAACCAGAAGAACCAAAGAAAGAAGAAGAGAAGAAAGAAGGTGAAAAGGCAACAGAAGAGAAAAAACCGGAGGAAACCAAGGAACCGGTTCCGCCGCCGGAAATTGTGCTGAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGGAAAGTTCGTCGTTCACTCAAAGGATTTCCAGGTGTTGAAGATGTTGTAACTGATTGCAAATCTCACAAGGTTGTTGTGAAAGGAGAAAAAGCGGATCCGTTGAAGGTTCTAGAAAGAGTACAAAGGAAGAGTCATAGGCAAGTTGAGCTTCTTTCTCCGATCCCGAAGCCACCGTCGGAGGAAGAGAAGAAAGCGGAAGAGAAAGAGAAACCTAAACCGGAGGAAGAGAAGAAAGAAGAGCCTCAAGTTATCACAGTGATTCTGAAAGTTCACATGCATTGTGAAGCTTGTTCTCAGGAAATCAAAAGACGCATTGAAAGAATCAAAGGAGTGGAATCAGCAGAACCGGATCTGAAGAACTCACTGGTGACAGTGAAAGGAGTATTTGAAAGTGAGAAATTAGTTGAATATGTTTACAAGAGAACCGGAAAACAAGCGGTGATAGTGAAGCAAGAACCGGAGAAGAAAGAAGAAGCCAAAGAAACAAAGGAAGAAGAGAAGAAAACTGAGGAGAATGAGAAGAATGAGAAAGGTGGTGGTGAAGGAGAGGCAAAGAAAGAAGGTGGAGAGGGAGATGAAAAACAAGGTGGCGGTGGTGGTGGCGGTGATGGAGGAGGTGGTGGTGCAGAAGAAACCACGGTGGTGGAAGTGAAGAAAAATGAATATTTTTATAATCCACCGAGATATGGTATGGAGTTTCATGCTTATCCTGGACCAGCTTACCCTCCACAGATTTTCAGTGATGAGAACCCCAATGCTTGTTCTATAATGTAA	966	0.4337	MGEEEKKPEETKVEEKKPEEPKKEEEKKEGEKATEEKKPEETKEPVPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVVTDCKSHKVVVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPSEEEKKAEEKEKPKPEEEKKEEPQVITVILKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSLVTVKGVFESEKLVEYVYKRTGKQAVIVKQEPEKKEEAKETKEEEKKTEENEKNEKGGGEGEAKKEGGEGDEKQGGGGGGGDGGGGGAEETTVVEVKKNEYFYNPPRYGMEFHAYPGPAYPPQIFSDENPNACSIM	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g05781	321	ProSiteProfiles	Heavy-metal-associated domain profile.	147	211	IPR006121	GO:0046872
	Vivi5g05781	321	Coils	Coil	216	240	-	-
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	1	47	-	-
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	120	145	-	-
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	109	145	-	-
	Vivi5g05781	321	CDD	HMA	152	210	IPR006121	GO:0046872
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	1	51	-	-
	Vivi5g05781	321	Pfam	Heavy-metal-associated domain	53	106	IPR006121	GO:0046872
	Vivi5g05781	321	Pfam	Heavy-metal-associated domain	153	207	IPR006121	GO:0046872
	Vivi5g05781	321	SUPERFAMILY	HMA, heavy metal-associated domain	52	107	IPR036163	GO:0046872
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	216	257	-	-
	Vivi5g05781	321	CDD	HMA	57	113	IPR006121	GO:0046872
	Vivi5g05781	321	Gene3D	-	144	213	-	-
	Vivi5g05781	321	MobiDBLite	consensus disorder prediction	216	277	-	-
	Vivi5g05781	321	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	33	321	IPR044577	GO:0046872
	Vivi5g05781	321	Gene3D	-	48	120	-	-
	Vivi5g05781	321	ProSiteProfiles	Heavy-metal-associated domain profile.	48	112	IPR006121	GO:0046872
	Vivi5g05781	321	SUPERFAMILY	HMA, heavy metal-associated domain	145	216	IPR036163	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g05781	Vivi-Chr5	161641745	161643618	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g05781	-		-	twl:119985324	287.73

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi5g05781	5	161641745	161643618	Vivi5g05781	5	161641745	161643618	ECH
	Vivi5g05781	5	161641745	161643618	Vivi3g02191	3	36120764	36122514	PCT