Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05724 ATGGAAACAGTACTGAACGTGAAGGGACCAGGATTAGAAGATTGTAACAAAGATTTAGAACATGCTAATAAGGAATTAGAAGCACATACAAGAGTTGTTGCACATGATGTTGTCACTGAAACTGAACTCAACAAAATTCGCCTCGTGAGGGACTTTGTTGAAACACATGATCCATCTTCTAAGGAAAAAGATGATTTAATAATCAGAAGGTTTCTACGTGCTCGTGATTTAGACGTGGAAAAGGCTTCAGCAATGTTCCTCAAATACTCAAAATGGAGACATTCATTTGTTCCAAATGGTTCCATATCTCTATCACAGGTTCCTAATGAAATTGCAGATGACAAGGTTTTTATCCAAGGACATGACAAGATTGGTCGACCTATATTTGTTGTGTTCGGTGGAAAACATTTTCAAAAGAAAGATGGTCTAGAAGAATTCAAACGATTTGTAGTTTATATTCTTGATAAATTATGTGCAAGTATGGCTCACGGGCAAGAAAAATTTGTTGGTATAGCAGAACTTAAGGGATGGGGTTACACAAATAGTGATGTTCGTGGATACATTTCTGCGCTCTCTATTTTACAGGATTACTATCCTGAAAGATTGGGGAAGTTGTTTATTCTCCATGCACCATACATTTTTATGAAAGTGTGGAAAATGGTTTATCCATTCATTGACAACAAAACCAGAAACAAGATAGTATTTGTGGAAAACAAAAAGGTGAAATCAACACTTATAGAAGAAATAGACGAAAATCAACTCCCTCAGATCTATGGTGGAAAACTACAATTAATTGCTATTCAAGATAGCTAA 813 0.3555 METVLNVKGPGLEDCNKDLEHANKELEAHTRVVAHDVVTETELNKIRLVRDFVETHDPSSKEKDDLIIRRFLRARDLDVEKASAMFLKYSKWRHSFVPNGSISLSQVPNEIADDKVFIQGHDKIGRPIFVVFGGKHFQKKDGLEEFKRFVVYILDKLCASMAHGQEKFVGIAELKGWGYTNSDVRGYISALSILQDYYPERLGKLFILHAPYIFMKVWKMVYPFIDNKTRNKIVFVENKKVKSTLIEEIDENQLPQIYGGKLQLIAIQDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05724 270 CDD SEC14 116 261 IPR001251 -
Vivi5g05724 270 SUPERFAMILY CRAL/TRIO N-terminal domain 38 99 IPR036273 -
Vivi5g05724 270 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 266 IPR001251 -
Vivi5g05724 270 PANTHER OS03G0850700 PROTEIN 37 269 - -
Vivi5g05724 270 SUPERFAMILY CRAL/TRIO domain 113 263 IPR036865 -
Vivi5g05724 270 Pfam CRAL/TRIO, N-terminal domain 42 87 IPR011074 -
Vivi5g05724 270 Gene3D - 5 268 IPR036865 -
Vivi5g05724 270 SMART CRAL_TRIO_N_2 64 89 IPR011074 -
Vivi5g05724 270 SMART sec14_4 110 263 IPR001251 -
Vivi5g05724 270 Coils Coil 12 32 - -
Vivi5g05724 270 Pfam CRAL/TRIO domain 115 260 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05724 Vivi-Chr5 160721325 160725670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05724 70 256 Acyl Lipid Metabolism Gene Families AT5G47730 25.616 3.51e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05724 - - mtr:25501978 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05724 5 160721325 160725670 Vivi5g05724 5 160721325 160725670 ECH
Vivi5g05724 5 160721325 160725670 Vivi3g02262 3 37276801 37278919 PCT