Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05576 ATGCCTGGGTTTATTGCTGTTGAGAAAAAATTTACAGCAAAAAAAATGAGTTTTTCTAATTTGGCTAATCATGATAATTTAGCTGTTTCGAAAGGAAATGGTAGTGTGAGGTCTGAGGCTCTTGATGATGATGAGAATAGTCCTATTCTTGCTGGGTTGTCTGATGATGTTTCGAAGTATTGCCTTGCACTCGTGCCTCGTTCGAGTTTTCTGGCTATGGGCGGTGTCTCTAAGAGATGGAAGCGGTTTATTCAGAGCAAAGAATTCATAACGGTGCGAAAATTGGCTGGGCTGCTTGAGGAATGGCTCTATGTATTGACATCAGATGGTGATGGAAAAGGAAGTCATTGGGAGGTGATGGATTCTTTTGGTCATAATCGTAGGTCTGTTCCGCCAATGCCTGGTCCACGGAAGGCCGAGTTTGGTGTCGTGGTTCTTGACGGACAACTTCTTGTTATGGCTGGCCATTCATCAATTGATGGAGCTGTTTCTGTCTCACCAGAGGTTTACCAATATAATTCTAACCTCGACAGCTGGAGTAGATTGTCAAACATGAATGTGGCTCGGTACGATTTCGCCTCTGCAGAAGTCAATGGCCTGGTTTATGCAGTTGGAGGATATGGAGCAGAAGGCGACAGTCTCTCTAGCGCGGAGGTATATGATCCGGATACTAACAAGTGGACATTGATTGAGAGTCTTCGCCGTCCAAGATGGGGCTGCTTTGCTTGCGGATTCGAGGGGAAGCTCTACGTGATGGGCGGAAGGTCAAGTTTTACAATCGGAAACTCAAAGTCGGTCGATGTTTACGATCCTGAGAAGCAAAACTGGCGTGAGATGAAAAACGGGTGTGTCATGGTCACTGCTCATGCAGTACTTGAAAAGAAATTGTTCTGTATGGAGTGGAAAAATCAACGAAAGTTATCGATATTCAATCCTGATGATCATTCATGGAAAACGGTATCGGTCCCTCTGACGGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGTTGTTTTCGCTGAAAGAAGATCCTACTTATAGGACTTTGTTGTATGATCCAAATGCATCGCCGGGGTCGGAGTGGGGGACTACTGATATAAAACCATCTGGTGTGTGTTTGTGCAGTGTAACTATCAATGCTTGA 1161 0.4453 MPGFIAVEKKFTAKKMSFSNLANHDNLAVSKGNGSVRSEALDDDENSPILAGLSDDVSKYCLALVPRSSFLAMGGVSKRWKRFIQSKEFITVRKLAGLLEEWLYVLTSDGDGKGSHWEVMDSFGHNRRSVPPMPGPRKAEFGVVVLDGQLLVMAGHSSIDGAVSVSPEVYQYNSNLDSWSRLSNMNVARYDFASAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTNKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKSVDVYDPEKQNWREMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDHSWKTVSVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNASPGSEWGTTDIKPSGVCLCSVTINA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05576 386 Gene3D - 87 384 IPR015915 GO:0005515
Vivi5g05576 386 CDD F-box_AtAFR-like 49 93 - -
Vivi5g05576 386 PANTHER OS02G0202900 PROTEIN 8 382 IPR045887 -
Vivi5g05576 386 SUPERFAMILY F-box domain 47 90 IPR036047 GO:0005515
Vivi5g05576 386 SMART kelc_smart 200 247 IPR006652 GO:0005515
Vivi5g05576 386 SMART kelc_smart 149 199 IPR006652 GO:0005515
Vivi5g05576 386 SMART kelc_smart 248 296 IPR006652 GO:0005515
Vivi5g05576 386 Pfam F-box domain 52 89 IPR001810 GO:0005515
Vivi5g05576 386 Pfam Kelch motif 188 233 IPR006652 GO:0005515
Vivi5g05576 386 Pfam Kelch motif 240 280 IPR006652 GO:0005515
Vivi5g05576 386 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Vivi5g05576 386 SUPERFAMILY Kelch motif 100 347 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05576 Vivi-Chr5 158990556 158992403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05576 53 231 Miscellaneous Gene Families AT4G33900 25.907 7.68e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05576 - - gmx:100815474 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05576 5 158990556 158992403 Vivi5g05576 5 158990556 158992403 ECH
Vivi3g03362 3 56647704 56649492 Vivi5g05576 5 158990556 158992403 PCT