Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05566 ATGAGAACAAGAAGAGGGTCTTGTTATCTTGAATCTGAAATAGTGACAAAGATGTGTTCTTTGGGGAAGAGAAAGAAGGACATGCATATTTCCAAGAAAACTATTTTTTGTGGAAAGAGACCAAAGAAGTGTTTGGAGAAAACTTCATCAGAATATGATTTTTTCGAGGCCTTGCCAGATGATATCGTTATTTCTATCTTCTGCAGGCTAAGTTCTACAGCCACTTCACCTTCCGATTTTGTAACCGTTTTATCAACATGTAAAAGATTCAAAAGATTAGCACTTCATTCTCTTGTTTTATCAAAAGCTTCTCCCAGAACTTTCGCCATTAGAGCCAAAAATTGGTGCGAATCTGCACAACAATTTCTTAAACAGTGTGCTGAGGCAGGGAATGTTGAAGCCTGTTATACTCTGGGCATGATTCGGTTTTACTGTTTGCAAAACAGAGGGAGCGGTGCTTCGCTTATGGCGAAAGCTGCAATAAACTCTCACGCGCGTGCACTCTACTCGCTTGCAGTTATACAGTTCAACGGCAGCGGCGGTACCAAAAGTGATAAGGACCTCCGTGCCGGTGTTGCTCTCTGCGCCAGAGCCGCTTTTCTCGGCCATATCGACGCGCTTCGTGAGCTTGGACACTGTTTACAAGACGGTTACGGTGTGAAACAGAATATCTCCGAGGGGAGGCGCTTTCTCATTCAGGCTAACGCACATGAACTCTCCGGCGTTTTGTCCACAGATGCCGCCGCGCGTCAGTTGGTTAATGCTAATCTCCAATCTCAACTTAAATACGTCGCTGCGTCTGGATGTCCGTTATTGAGCGATTTTGGATGTAATGTTCCGGCGCCGGAGCCGCATCTGTCCAGTCGGTTTATGACGGAGTGGTTTGCCGTTCGCGGCGGATTGAATGGATCGGGTTTGAGGCTCTGTTCGCATGTGAGTTGTGGGAGGCCGGAGACGCGAAAGCACGAGTTTCGAAGGTGTTCGGTTTGTGGCGCGGTGAATTATTGCTCGCGTGCGTGTCAAGCGCTTGATTGGAAGTTCCGTCATAAGGCGGAGTGTGCCCCTGTGGAGCGGTGGCTTGAAGAGGATGGTGATGACGATAAAGTTGACAACGACGATGAGTGGTCAGTGCTTCTTCGGCTTTGA 1146 0.4764 MRTRRGSCYLESEIVTKMCSLGKRKKDMHISKKTIFCGKRPKKCLEKTSSEYDFFEALPDDIVISIFCRLSSTATSPSDFVTVLSTCKRFKRLALHSLVLSKASPRTFAIRAKNWCESAQQFLKQCAEAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNISEGRRFLIQANAHELSGVLSTDAAARQLVNANLQSQLKYVAASGCPLLSDFGCNVPAPEPHLSSRFMTEWFAVRGGLNGSGLRLCSHVSCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLEEDGDDDKVDNDDEWSVLLRL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05566 381 SUPERFAMILY HCP-like 115 235 - -
Vivi5g05566 381 CDD F-box_SF 58 94 - -
Vivi5g05566 381 ProSiteProfiles Zinc finger MYND-type profile. 311 353 IPR002893 -
Vivi5g05566 381 Pfam MYND finger 313 353 IPR002893 -
Vivi5g05566 381 Gene3D - 42 97 - -
Vivi5g05566 381 SUPERFAMILY F-box domain 46 109 IPR036047 GO:0005515
Vivi5g05566 381 Gene3D Tetratricopeptide repeat domain 98 262 IPR011990 GO:0005515
Vivi5g05566 381 FunFam Predicted protein 301 358 - -
Vivi5g05566 381 SUPERFAMILY HIT/MYND zinc finger-like 313 358 - -
Vivi5g05566 381 Gene3D - 304 357 - -
Vivi5g05566 381 PANTHER MYND DOMAIN-CONTAINING 8 367 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05566 Vivi-Chr5 158804675 158807949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05566 - - gmx:100798174 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05566 5 158804675 158807949 Vivi5g05566 5 158804675 158807949 ECH
Vivi3g03376 3 56767356 56769728 Vivi5g05566 5 158804675 158807949 PCT