Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05564 ATGCAGGTCAACGAAAAAATGAGGAACCGTTATCCTCTTATCGGTGAAAAACGTTGGTCGGTAGTTTTATTGGTCATTCTAGGAATAATCGGAGCATTGGTTTTCGCAACAACCTTACTCCAAACCTCCAACAACACCTTGCTATGTTCCCTCACCCGAACCACAACCCAACAATCCAACCCTACACCGATCCAGCTTCGTGCCATTCTCCACTACGCAACCTCCCACGTTGTCCCCCAACAATCCCTCGCCGAGATCAGCATAACGTTAAACGTCATCAAATCGTTAAACCGTCCCTTCAACTTCCTCGTCTTTGGCCTCGGCCACGATTCCCTCATGTGGGCCGGGTTCAACCCAAAGGGAACCACGCTCTTCCTCGAGGAAGATCCGAAATGGGTTCAAACCGTTCTCAAAGACGCGCCGGAGCTTAGAGCCGTGACGGTTCCCTACCGTACGCAGCTTCAAGAAGCCGATGAGCTTCTCAAATCGTACCGATCTGAGCCGGCTTGTTCTCCGGCGAAAGCCACGCTGAAAGGCAACGAGAAATGTAAGCTGGCGCTTCATAATCTTCCCAACGAGGTTTACGATACTGACTGGGATTTGATCATGATCGACGCGCCGAGAGGATACTTCGCGGAGGCGCCGGGGCGTATGGCGGCGATATTTTCGATGAACGTTATGGCCAGAAACAGAAAAGGCTCCGATGGGACACACGTGTTCTTGCACGATGTGGATCGGAAGGTTGAGAAGGAATACGCTGAAGAGTTTCTGTGTAAGAAAAACAAAGTGGATGGTGTGGGAAGACTCTGGCACTTCAAAATTCCTGCAAGTGGAAACAATGACACTCGTCGTGATTCTACTGATTCGAGTTTCTGTTAG 879 0.5017 MQVNEKMRNRYPLIGEKRWSVVLLVILGIIGALVFATTLLQTSNNTLLCSLTRTTTQQSNPTPIQLRAILHYATSHVVPQQSLAEISITLNVIKSLNRPFNFLVFGLGHDSLMWAGFNPKGTTLFLEEDPKWVQTVLKDAPELRAVTVPYRTQLQEADELLKSYRSEPACSPAKATLKGNEKCKLALHNLPNEVYDTDWDLIMIDAPRGYFAEAPGRMAAIFSMNVMARNRKGSDGTHVFLHDVDRKVEKEYAEEFLCKKNKVDGVGRLWHFKIPASGNNDTRRDSTDSSFC 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05564 292 PANTHER OS11G0490100 PROTEIN 21 292 IPR006514 GO:0045492
Vivi5g05564 292 NCBIfam TIGR01627 domain 67 282 IPR006514 GO:0045492
Vivi5g05564 292 Pfam Polysaccharide biosynthesis 84 272 - -
Vivi5g05564 292 Gene3D Vaccinia Virus protein VP39 80 285 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05564 Vivi-Chr5 158740319 158741505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05564 - - pvu:PHAVU_002G173400g 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05564 5 158740319 158741505 Vivi5g05564 5 158740319 158741505 ECH
Vivi3g03383 3 56877143 56878709 Vivi5g05564 5 158740319 158741505 PCT