Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05556 ATGTCGGATTGGGGGCCAGTGTTTGTTTCAATTGTGCTATTTGTTTTGTTGACGCCAGGATTGTTGTTTCAGATACCTGGACGGTCGAGATGCATTGAGTTTGGAAACTTTCAGACAAGTGGTGCTTCAATACTCATTCATTCTCTTCTCTATTTTGGTCTCGTTTGCATTTTCTTCCTTGCTGTTAAGATTCACCTGTGTAAATTGTGCAAAGTGATGGCTGCTGATTGGGCTCCGGTGGTGATATCAGTGGTGCTATTTGTTCTACTAAGTCCAGGACTACTCTTCCAGCTACCTGCTAAGGGAAGGGTGGTGGCTTTTGGAAGCATGCAAACTAGTGGTATCTCTATCTTGGTCCATACCATCATCTTCTTTGGACTCATCACCATTTTTCTACTTGCTATTGGTGTCCATATCTACTCAGGATAA 429 0.4289 MSDWGPVFVSIVLFVLLTPGLLFQIPGRSRCIEFGNFQTSGASILIHSLLYFGLVCIFFLAVKIHLCKLCKVMAADWAPVVISVVLFVLLSPGLLFQLPAKGRVVAFGSMQTSGISILVHTIIFFGLITIFLLAIGVHIYSG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05556 142 Pfam Protein of unknown function (DUF3339) 75 140 IPR021775 -
Vivi5g05556 142 Pfam Protein of unknown function (DUF3339) 1 66 IPR021775 -
Vivi5g05556 142 PANTHER OS05G0103400 PROTEIN 75 142 IPR021775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05556 Vivi-Chr5 158637952 158643991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05556 - - ccaj:109810730 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05556 5 158637952 158643991 Vivi5g05556 5 158637952 158643991 ECH
Vivi3g03405 3 57236605 57236934 Vivi5g05556 5 158637952 158643991 PCT