Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05538 ATGGAGGTGGAAAAGGGTATTGAGATGGTGGCATTGGAATCTCTGGGTAAAGGGTTTGATTTGGCTAGTGATTTTCGTTTGAGGTTTGCTAAGGGAATTCGTGAGGGTGGTGGTGGTGATAGTAGGAAAAGGTTGGTGGTGCTTGATGAACAAAATAAAAGAGATATTTTGATTCCTGGAGTTGGTGGAGCTACCTTAATCAAAGGGGTTTCTGAGAATATCCGTTGTGATAAAGGGGATCGAATTCGCTTCAAGTCTGATGTACTTGAATTCAATCAGATGTCCGAGTTGCTAAATCAAAAATCAGCAGTACATGGAAAAATACCTTCTGGCTATTTTAATGCTCTTTTTGATTTGAGTGGTGATTGGCTTCGAGATGCTTCTGACATCAAATCTCTTGCTTTTGATGGATATTTCATTTCTCTCTATTGTCTGCACTTGACTACTTCTCCACTTGTACTGCAAGAGGAAGTAAAGAAGTCTGTTCCAGCTCAGTGGGATCCCGCTGCATTGTCTAGGTTCATCCAGACATATGGTACTCACATAGTAGTAGGCATGGATGTTGGAGGTCAAGATGTAATTTGTGTCAAACAAAGACATTCATCTAAGATTCCTCCGGGTGATATCAGAAGACATTTAGAGGATCTTGGAGATTTTTTATTTTCGGATGTAAGAAGTCCTTCTTCACTACAAAGGAAGACGGCAGATAGCAAACAGAAGGTTCCCGAGGTCTTTAATCGCGTGATGCAATCAAACACAACGCAGTTTACTAGTATTTCAGAAACATCGAGCAAGGATGGCCTCACTATTATTTGTTCCAAAAGAGGAGGAGATGTGTACAAGCACAGTCACTCAAATTGGCTCCAGACAGTCCCTTCTAATCCTGAAGCCATCAAATTCAAGTTTGTTCCTATTTCATCACTTCTAACTGGAATTCCAGGAAGTGGCTATCTTAGTCATGCAATCAATTTATATTTACGATATAAGCCTTCTCCCGAAGATTTACAATACTTTTTGGAGTTTCAAATTCCAAGGCAATGGGCGCCCATGTTTTGCGAACTGCCTCTCAGGCATCAGCGGAGAAAAACCTCTTCCCTTTCCCTGCAATTCTATTTTTTTGGTCCAAAGCTTCAAATTAGCTCCACACAGGTGGTAAGTGATCAGAAACCCGTGGTTGGCCTCCGCCTGTTCTTGGAGGGCAAGAAAAGTGACAGACTTGCTTTACATATAAATCATCTTTCAAGCCTCCCAAACAAAATGGTCCTCTCTTCAGATACCTCAACCCCGAGCGTACGATCTATGTGGCGAGGATCTGATGAAAATGAATCCAGTAACCAATTCCTGGAACCAATCAGATGGAAGAGATTCTCAAATGTATGCACAGCTGTCGTCAAGCACGACCCTAACTGGTTGAATAATTGCGGAGGTGTTTACATAGTAACCGGTGCACAACTCATTACCAAAGGAAGTTGGCCAAGAAACGTGCTTCATCTATGTCTTCTCTTTACTCATATAACCAACTGCACCATACGGAAGTCGGAGTGGGGTACCGCACCCGAGACTTCAAGAAAATCATCTTTCCTCACAAATTTGAGCACAACATTTTCATTCACTCAGCAGGGTATCACTGCTGCTCCACCAAAGAAGCCTCCTACTTCACTTAACTCTGGCATTTATCCAAACGGCCCACCCGTACCTGTTCGCTCGAGCAAGCTATTGAGATATGTTGAGACAGCTGAGGTTTTACGAGGCCCTCATGATGCTCCTGGACATTGGATGGTCACAGCTGCTAAGCTTGTGACCGACGGTGGTAAGATAGGATTGCAAGTAAAATTCGCATTGTTGGACTATTGGTGA 1857 0.4286 MEVEKGIEMVALESLGKGFDLASDFRLRFAKGIREGGGGDSRKRLVVLDEQNKRDILIPGVGGATLIKGVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSAVHGKIPSGYFNALFDLSGDWLRDASDIKSLAFDGYFISLYCLHLTTSPLVLQEEVKKSVPAQWDPAALSRFIQTYGTHIVVGMDVGGQDVICVKQRHSSKIPPGDIRRHLEDLGDFLFSDVRSPSSLQRKTADSKQKVPEVFNRVMQSNTTQFTSISETSSKDGLTIICSKRGGDVYKHSHSNWLQTVPSNPEAIKFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPEDLQYFLEFQIPRQWAPMFCELPLRHQRRKTSSLSLQFYFFGPKLQISSTQVVSDQKPVVGLRLFLEGKKSDRLALHINHLSSLPNKMVLSSDTSTPSVRSMWRGSDENESSNQFLEPIRWKRFSNVCTAVVKHDPNWLNNCGGVYIVTGAQLITKGSWPRNVLHLCLLFTHITNCTIRKSEWGTAPETSRKSSFLTNLSTTFSFTQQGITAAPPKKPPTSLNSGIYPNGPPVPVRSSKLLRYVETAEVLRGPHDAPGHWMVTAAKLVTDGGKIGLQVKFALLDYW 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05538 618 PRINTS Complement C9 signature 160 182 IPR001862 GO:0005579|GO:0006955
Vivi5g05538 618 PRINTS Complement C9 signature 286 305 IPR001862 GO:0005579|GO:0006955
Vivi5g05538 618 Pfam MAC/Perforin domain 113 325 IPR020864 -
Vivi5g05538 618 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 8 617 IPR044663 GO:0006952|GO:0012501|GO:2000031
Vivi5g05538 618 SMART MACPF_8 130 327 IPR020864 -
Vivi5g05538 618 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 339 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05538 Vivi-Chr5 158349488 158353877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05538 - - gmx:100781070 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05538 5 158349488 158353877 Vivi5g05538 5 158349488 158353877 ECH
Vivi3g03412 3 57312091 57315144 Vivi5g05538 5 158349488 158353877 PCT