Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05183 ATGCATCTAGAGCTTGATGCTTTTACTGCTTTGGTTATTATTTTGTGTTTCCTTGGATTGATTCTCAAGGAGACAGTAATGGGAGGGAGTAGTTCAAAAGAGTCCCACTCTCACAAGAGACATGTAACTTCACCGTCATCATCATCATATGGGTCTGTTGGTTCTTCGTCTTCTTCGGATATTCATAACTTTGGATATCCGCAATCGTCTTATCCATATAATAAACCGTATCAAAGACCTAATTACCAGCGGAATACACAGGCTAACTTGCATGATTATTCACGACCTAATAGGAAGTTGGATAGGAGGTATTCAAGGATTGCTGATGATTATCATTCTCTTGATGAGGTTACTGCTGCTCTTTCTCATGCTGGATTGGAATCGTCGAATCTAATTGTTGGCATTGATTTCACAAAGAGCAACGAGTGGACTGGGAAGAGGTCATTCAATCGAAAAAGTTTACATCACATCGGAAATGGTCAAAATCCTTATGAGCAAGCAATTGCGATTATTGGGAAGACATTAATCTCTTTTGATGAGGATAACATGATTCCGTGTTTTGGATTTGGAGATGCATCAACTCATGATCAAGATGTCTTCAGTTTCCATTCGGATGAGAGATTCTGCAATGGATTTGAAGAAGTTTTGTCAAGATATAGAGAGATTGTTCCATGCCTCCGACTCGCAGGACCAACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATTGTTGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATAGCTGATGGACAGGTGACTAGAAGCGTTGACACAGAGAATGGCAAGCTAAGTTCACAGGAAAAGAAGACAATTGATGCAATAGTAAAAGCTAGTGAGTATCCACTATCGATAGTTTTGGTTGGAGTCGGAGATGGGCCGTGGGATATGATGAGGGAATTTGACGATAACATTCCAGCTCGAGCCTTCGACAACTTTCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAATGTGGATTCAAATCGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCATCTCAATATAAGGCAACCATAGATCACAACCTATTGGGGACTCGAAGGGGACATTCACCAGACAGGGTTCCATTACCTCCACCTCAATACGATAGAGCTTCTTCTAGTAACAGCGCAGCATATATCCGTTCAAACAGTTTTCAACAGGGCACATCATATATCCGTTCAAACAGTTTTCAGCAGAGTACACATACGAATGCGAGCAACAACATTGAAATGAACACAGAGCCGTCTTCATCTGGTTTATATGACAATAAGGTTTGCCCGATTTGTCTTACTAATACGAAGGATATGGCCTTTGGCTGCGGGCATCAGACTTGTTGCGAATGTGGAGAAAGCCTTGAACTCTGCCCTATTTGTCGGAGTACAATCTATACCAGAATAAAGCTTTACTGA 1458 0.4081 MHLELDAFTALVIILCFLGLILKETVMGGSSSKESHSHKRHVTSPSSSSYGSVGSSSSSDIHNFGYPQSSYPYNKPYQRPNYQRNTQANLHDYSRPNRKLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAIAIIGKTLISFDEDNMIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYREIVPCLRLAGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTENGKLSSQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDSNRKETEFALAALMEIPSQYKATIDHNLLGTRRGHSPDRVPLPPPQYDRASSSNSAAYIRSNSFQQGTSYIRSNSFQQSTHTNASNNIEMNTEPSSSGLYDNKVCPICLTNTKDMAFGCGHQTCCECGESLELCPICRSTIYTRIKLY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05183 485 PANTHER COPINE FAMILY PROTEIN 1 33 462 - -
Vivi5g05183 485 SMART VWA_4 128 331 IPR002035 -
Vivi5g05183 485 Pfam Zinc finger, C3HC4 type (RING finger) 439 478 - -
Vivi5g05183 485 MobiDBLite consensus disorder prediction 29 55 - -
Vivi5g05183 485 MobiDBLite consensus disorder prediction 72 95 - -
Vivi5g05183 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 485 IPR013083 -
Vivi5g05183 485 MobiDBLite consensus disorder prediction 72 93 - -
Vivi5g05183 485 SUPERFAMILY vWA-like 130 312 IPR036465 -
Vivi5g05183 485 SUPERFAMILY RING/U-box 436 481 - -
Vivi5g05183 485 Pfam Copine 153 367 IPR010734 -
Vivi5g05183 485 ProSiteProfiles Zinc finger RING-type profile. 442 475 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05183 Vivi-Chr5 153022720 153026221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05183 K16280 - gmx:100790937 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05183 5 153022720 153026221 Vivi5g05183 5 153022720 153026221 ECH
Vivi5g05183 5 153022720 153026221 Vivi3g03257 3 55220661 55223690 PCT