Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03257 ATGCATCTTGAGCTAGAAACTTGGACAGCTTTGGTTGCAATTTTGTGTTTACTTGTCTTTATTCTGCAAGAGATTCTTATGGGAGGAAATAGTTCTAAAGGGTCTTCTTCACCTAGAAGGAGACATGTTCCTTCATATGAATCTTCAGGTTCTTCTTCATCTTCATGGAATAATAACTATGATGGATATCCACCACAGTCACCATATCCTCAGCAGAGTCCATATCAAACACCTCAGCATCAGTTTTCATCTGCATCAGCTCCGTTTTATGATAATTCACAGCAGAAAAAGAAGTTGGATAAGAGGTATTCAAGGATTGCTGATGATTATCGTTCACTGGATGAGGTTACTGCTGCTCTTGCAAATGCTGGGCTGGAGTCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGTTCATTCAATCGGAAAAGTTTACATCACATTGGAAGCAGTCAAAACCCTTATGAACAAGCAATCTCTATTATTGGGAAAACTCTATCTACTTTTGATGAAGATAACTTGATTCCATGTTTTGGTTTCGGAGATGCGTCTACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAGAGGTTATGTAACGGGTTTGAAGAAGTTTTGGCACGATACAGAGAAATTGTTCCTCACCTCAAACTTGCAGGACCGACTTCGTTCGCCCCCATTATTGAGATGGCCATAACTATTGTTGAACAAAGTGCTGGCCAATATCATGTCCTGCTTATAATTGCAGATGGACAGGTGACCAGAAGCGTCGATACAGAACATGGCCACCTAAGTCAACAGGAACAGAAGACGATAAATGCAATCGTAAAAGCCAGCGAGTATCCGCTGTCAATAGTTTTGGTAGGAGTTGGAGATGGACCGTGGGAGATGATGGAGGAATTTGACGATAACATTCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTCACTAAGATAATGTCGAAAAATACAAATCCATCCCGAAGAGAGGCAGAGTTTTCTCTTGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAACTTGGCTTATTGGGTTCGCGGAGGGGACATTCACCAGATAGGGTTCCTCTACCTGCTCCTCTTTATAATAGGACTTCTTCCAACGTCAGTGGAAAATCTTTTCGGTCAAACAGCTTTCAGCCAAATGTGCGTAGAGGTACTGGCTATGAATATGATAGCGGTGTTCACAATCACACAGAACCATCTACAAGCTCTTTACATGATAATAAGGTTTGCCCGATTTGTCTTACCAATCCAAAGGATATGGCCTTCGGTTGTGGACACCAGACTTGTTGTGGATGTGGAGAAGACCTCGAATTCTGTCCGATTTGCAGGAGCACAATCACTACTAAGATAAAGCTTTATTAG 1431 0.4116 MHLELETWTALVAILCLLVFILQEILMGGNSSKGSSSPRRRHVPSYESSGSSSSSWNNNYDGYPPQSPYPQQSPYQTPQHQFSSASAPFYDNSQQKKKLDKRYSRIADDYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKSSFNRKSLHHIGSSQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEERLCNGFEEVLARYREIVPHLKLAGPTSFAPIIEMAITIVEQSAGQYHVLLIIADGQVTRSVDTEHGHLSQQEQKTINAIVKASEYPLSIVLVGVGDGPWEMMEEFDDNIPSRAFDNFQFVNFTKIMSKNTNPSRREAEFSLAALMEIPSQYKATIELGLLGSRRGHSPDRVPLPAPLYNRTSSNVSGKSFRSNSFQPNVRRGTGYEYDSGVHNHTEPSTSSLHDNKVCPICLTNPKDMAFGCGHQTCCGCGEDLEFCPICRSTITTKIKLY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03257 476 PANTHER COPINE FAMILY PROTEIN 1 70 453 - -
Vivi3g03257 476 ProSiteProfiles Zinc finger RING-type profile. 433 466 IPR001841 -
Vivi3g03257 476 Pfam Zinc finger, C3HC4 type (RING finger) 430 470 - -
Vivi3g03257 476 SUPERFAMILY RING/U-box 427 472 - -
Vivi3g03257 476 SMART VWA_4 127 327 IPR002035 -
Vivi3g03257 476 Pfam Copine 152 365 IPR010734 -
Vivi3g03257 476 MobiDBLite consensus disorder prediction 73 87 - -
Vivi3g03257 476 CDD vWA_copine_like 106 356 IPR010734 -
Vivi3g03257 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 476 IPR013083 -
Vivi3g03257 476 MobiDBLite consensus disorder prediction 30 87 - -
Vivi3g03257 476 MobiDBLite consensus disorder prediction 30 66 - -
Vivi3g03257 476 SUPERFAMILY vWA-like 128 311 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03257 Vivi-Chr3 55220661 55223690 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03257 K16280 - gmx:100820356 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05183 5 153022720 153026221 Vivi3g03257 3 55220661 55223690 PCT