Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05174 ATGAAGTGTTTCGCACTGTGCTTGGTTTCTTTCTGGGTTCTCTTTGGTTTCTGGTTTCAGAGTGTGTCATCCCAAAATTTTTCTGTGAGTGCCATAAAGCAAGCTGCCTCGCCACCGAGAGGTTGGAATTCCTATGATTCATTTTCTTGGATAATTTCTGAACAGGAATTCTTACAGAATGCTGAAATTGTTTCTCAGCGTCTTCGTGCTTTTGGATATGAGTATGTTGTGGTGGATTACCTCTGGTATAGGAGGTTTGTAGATGGTGCTAATAGTAATTCTCTTGGATTCGACGTGATTGATCAATGGGGAAGGATGGTCCCTGATCCAGTAAGGTTTCCTTCTTCCAATGATGGGAAAGGATTCACTCAATTAGCTAAAAAAGTACATAGCTTAGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTGAATGCAAACACGCCTATCCTAGATCCAGCAACGGGTGGTGCCTATCAAGAATCCGGTCGAGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGGATGGATGTCTAATGGTTTCATGAGTGTAAATACAAAGTTAGGAGCAGGAAGAGCTTTTTTGAAATCGCTTTACCAACAGTATGCTGATTGGGGTGTTGATCTTGTGAAACATGATTGTGTGTTTGGTAGTGACTTGGATATAAATGAGATTACTTATGTATCTGAGGTTCTCAGCCAGCTTAATCACCCCGTTACGTATTCTTTATCTCCCGGACCCCATGCGACACCAGCCATGGCCAAGGAAATCAATGGACTAGTCAACATGTATCGCGTAACAGGAGATGACTGGGATAAATGGGAGGATGTCGAGCCTCACTTTGATGTTGCAAGGGACTTTTCTAATGCGAAACTGATAGGAGCAAATGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGATAACCGATCCAGGTGTGAATGAAGGTCCACACAGGTATTGTAGGCTGACTCTAAGTGAGCAAAAGTCACAGATAACTTTATGGGCTATAGCAAAGTCTCCCCTTATGTATGGAGGAGATTTGCGGAAGATCGATCCTTTCACATTCAGAATGATCACGGACCCTACCCTACTAGAGATTAATTCTTTCAGCTTAAATAATAAGGAGTATCCTTATGCCCGCGGCTCTGTGCATTTGAAGAATGAAGATCACAAAGTAAAGAGGATTAAACATTCATTAGGCCTAACTAGCTGCACCGAATCGAAGGCAAGTGGTTGGACTGCGGAAAGTCTTGACCATGATCTTCAAAGAATCTGTTGGAAAGGGGGTTTAGGAAACGAGAATCAGAAACCTTTTTGCGTAAACAAGAGAGGACTTCAGTTCAAATTAAACGGAGACAATACGTATCAAGAGAAATATCGCGGCAAAATTCATTTAGTTGCAACCAACGAAATGAGACTTTGCATGGATGGTTCTCCAAAACAAAAAGTTACCGCCAGTGAGTTCAAGATAGGCACATTTTCTCCTTGTACATTGGATTCAAATCAGATGTGGGAGCTAAACTCTAATGGAACCTTGGTAAATAGTTACTCTGGTCTTTGTGCAACAGTAAATTCCGTCGAAGTTAATGCTAACTCAGGCGGGATCCGTTCATGGGTTGCGACAGGAAGAAAAGGAGAATTGTATCTGGCTTTCTTCAATCTAAGTGAACAGAAGATGACGATAGAAACAACGACATCAGAGTTGGGTAAGTTTTTCCCTGCCGGAGGCATCCATACATGTCAAGGTACTGAAGTATGGACAGGAAAGAAAATTGTACCAAGCAAAACGCGAGGGAAGATCACCGCAGACGTTGATGTTCATGGATGTGCAATATTTGCTTTTACTTGCTAA 1899 0.4223 MKCFALCLVSFWVLFGFWFQSVSSQNFSVSAIKQAASPPRGWNSYDSFSWIISEQEFLQNAEIVSQRLRAFGYEYVVVDYLWYRRFVDGANSNSLGFDVIDQWGRMVPDPVRFPSSNDGKGFTQLAKKVHSLGLKFGIHVMRGISTQAVNANTPILDPATGGAYQESGRVWHAKDIAIPERACGWMSNGFMSVNTKLGAGRAFLKSLYQQYADWGVDLVKHDCVFGSDLDINEITYVSEVLSQLNHPVTYSLSPGPHATPAMAKEINGLVNMYRVTGDDWDKWEDVEPHFDVARDFSNAKLIGANGLKGNSWPDLDMLPFGWITDPGVNEGPHRYCRLTLSEQKSQITLWAIAKSPLMYGGDLRKIDPFTFRMITDPTLLEINSFSLNNKEYPYARGSVHLKNEDHKVKRIKHSLGLTSCTESKASGWTAESLDHDLQRICWKGGLGNENQKPFCVNKRGLQFKLNGDNTYQEKYRGKIHLVATNEMRLCMDGSPKQKVTASEFKIGTFSPCTLDSNQMWELNSNGTLVNSYSGLCATVNSVEVNANSGGIRSWVATGRKGELYLAFFNLSEQKMTIETTTSELGKFFPAGGIHTCQGTEVWTGKKIVPSKTRGKITADVDVHGCAIFAFTC 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05174 632 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 9 632 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 CDD RICIN 462 545 IPR000772 -
Vivi5g05174 632 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 Gene3D - 544 632 IPR013780 -
Vivi5g05174 632 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 Pfam Alpha galactosidase A 207 383 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Vivi5g05174 632 Pfam Alpha galactosidase C-terminal beta sandwich domain 549 628 IPR041233 -
Vivi5g05174 632 SUPERFAMILY Ricin B-like lectins 486 558 IPR035992 -
Vivi5g05174 632 Gene3D Aldolase class I 29 386 IPR013785 -
Vivi5g05174 632 SUPERFAMILY Glycosyl hydrolase domain 547 631 - -
Vivi5g05174 632 SUPERFAMILY (Trans)glycosidases 36 383 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05174 Vivi-Chr5 152894703 152898356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05174 11 459 Glycoside Hydrolase AT3G26380 61.269 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05174 - - gmx:100802840 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05174 5 152894703 152898356 Vivi5g05174 5 152894703 152898356 ECH
Vivi5g05174 5 152894703 152898356 Vivi3g03247 3 55124411 55128297 PCT