Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03247 ATGAAGTGTTTATCCATCTCTCTCTACATTCTCCTCTGTCTCTTCTCTTTTCAATGTGTATCATCTATAAATATCTCTGAGAGTGACATACAACAAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACTATTTCCGAACAAGAGTTCCTACAAAATGCTCAAATTGTTTCTCAGCGTCTCCATCATCATGGATACGAGTATGTTGTGGTGGATTATCTTTGGTATAGAAGAAAAGTCGAGGGCGCTTTTCATGATTCTTTAGGATTTGATGTGATTGATAAATGGGGGAGGGTCATTCCTGACCCGGGGAGATGGCCTTCTTCGAATGATGGGAAAGGGTTTAGCCAAGTGGCGAATCGAGTGCATAGCATGGGTTTGAAGTTTGGAATTCATGTTATGAGAGGGATTAGTACACAAGCTGTCAATGCAAACACGCCTATTCTAGATACGAAAACGGGGGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCGAAAGACATAGCGATCCGTGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAATTTGGGCGCTGGCAAAGCTTTTTTGAGGTCCCTTTATCAGCAGTATGCTTCATGGGATGTTGATTTTGTGAAACATGACTGTGTATTTGGCGAAGACTTGGATTTAAATGAAATAAGCTATGTGTCAGAGGTTCTCCGGGAGGTTAATCGCCCCATTGTCTATTCATTGTCTCCTGGAGCCAAAGTGACACCAGCCATGGCCAAGGATGTCAGCGGACTGGTCAATTTGTATCGTATAACAGGGGATGACTGGGATACATGGGTGGATGTCAAATCTCATTTTGATGTATCAAGAGATTTTGCAGCTGCGCATATGATAGGGGCAAAAAGTTTAATGGGGAACTCATGGCCGGATTTGGATATGCTACCGTTTGGATGGCTAACTGATCCTGCTAGTTGTCAGACTTCAAATACAGGTCCACGTAGGTATAGTAACCTCAACCTAGAAGAGAAGAGGACACAGATGACCTTATGGGCAATGGCAAAGTCTCCCCTAATGTATGGGGGCGATTTACGGAAGATTGATCCCACAACATATGGTCTTATCACAAATCCTACCCTGCTGGAGATTAATTCTTTTAGCTCAACTAATATGGAGTTTCCTTACATTACAAGCTTGAAGAATGAAGATCAGGATTCTGAGAGGCAAAAGAGAAGAAGCTACAGAGAAACAAAAGCATCATATACACATTCATTAGGCCTCACTAGCTGCACTGAGCCAAAGGCAAGGGGTTGGATTAGTGAGAGTATTAGTCATTATCCTGAAAGAATCTGTTGGAAAAGGAATTTAGGAAACAAGCATCTTGACCCCTTCTGCATGCACAAGAGAGAACCGAACATGGCATTAGATAAAGAGAATATGTATAAAAATTATCATCACTTAGTTGCAGCGAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACAAAACCTCACTTCCAAAGAGTTCAAGAGAGGTACATTTTCGCCCTGCAGGTGGGATTCAAATCAGATGTGGCGGTTGAACCGTAATGGGACCCTGGTAAATAGCTATTCAGGTTTATGCGCAATAGTAGAGCCTGTTAAAGCTACTATTAATTCTGCTGGTTTTCGCGCTTGGGCTGCAACCGGAAGAGCAGGAGAAATCTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGGCGGTTATATCTGTGAAGACATCAAACCTATCTAAGGTTTTTGTTAGGAGAGACTTGAGTTCTTGTAAAGGCAGGGAAGTGTGGAGTGGAAGAGACCTTGTAATAAGGCAAGGGGTGTTATCTGCGGAAGTGGAAATGCATGGAACTGCACTATTTGTTCTAAATTGTAATTAG 1917 0.4225 MKCLSISLYILLCLFSFQCVSSINISESDIQQASIPPRGWNSYDSFCWTISEQEFLQNAQIVSQRLHHHGYEYVVVDYLWYRRKVEGAFHDSLGFDVIDKWGRVIPDPGRWPSSNDGKGFSQVANRVHSMGLKFGIHVMRGISTQAVNANTPILDTKTGGAYQESGRVWYAKDIAIRERACAWMPHGFMSVNTNLGAGKAFLRSLYQQYASWDVDFVKHDCVFGEDLDLNEISYVSEVLREVNRPIVYSLSPGAKVTPAMAKDVSGLVNLYRITGDDWDTWVDVKSHFDVSRDFAAAHMIGAKSLMGNSWPDLDMLPFGWLTDPASCQTSNTGPRRYSNLNLEEKRTQMTLWAMAKSPLMYGGDLRKIDPTTYGLITNPTLLEINSFSSTNMEFPYITSLKNEDQDSERQKRRSYRETKASYTHSLGLTSCTEPKARGWISESISHYPERICWKRNLGNKHLDPFCMHKREPNMALDKENMYKNYHHLVAANRIKFCLDASPKQNLTSKEFKRGTFSPCRWDSNQMWRLNRNGTLVNSYSGLCAIVEPVKATINSAGFRAWAATGRAGEIYVAFFNLSEQKAVISVKTSNLSKVFVRRDLSSCKGREVWSGRDLVIRQGVLSAEVEMHGTALFVLNCN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03247 638 Gene3D Aldolase class I 14 387 IPR013785 -
Vivi3g03247 638 Pfam Alpha galactosidase A 206 385 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 Pfam Alpha galactosidase A 49 144 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 Pfam Alpha galactosidase C-terminal beta sandwich domain 558 635 IPR041233 -
Vivi3g03247 638 SUPERFAMILY (Trans)glycosidases 33 385 IPR017853 -
Vivi3g03247 638 PRINTS Glycosyl hydrolase family 27 signature 124 145 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 PRINTS Glycosyl hydrolase family 27 signature 343 364 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 PRINTS Glycosyl hydrolase family 27 signature 30 49 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 8 637 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 SUPERFAMILY Ricin B-like lectins 495 546 IPR035992 -
Vivi3g03247 638 CDD GH27 36 385 IPR002241 GO:0004553|GO:0005975
Vivi3g03247 638 Gene3D - 550 637 IPR013780 -
Vivi3g03247 638 SUPERFAMILY Glycosyl hydrolase domain 553 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03247 Vivi-Chr3 55124411 55128297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03247 10 475 Glycoside Hydrolase AT3G26380 63.191 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03247 - - gmx:100777954 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05174 5 152894703 152898356 Vivi3g03247 3 55124411 55128297 PCT