Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04597 ATGTCTCATGACCAAACACCCCCACAAGCTGAGGAAGTTCTTGTTGTTGCTAATGAGAATGTTCCACAGCCTGAAAAAACAACTACAATACCCTTGGAATCAGAGCAACAGGATCAACAACCGCAACCTGAGAAGAAAAATAACTTAGTTCCGGTTGTTGAATCTGTCACTCTAGAGACTCATCTCTCCAAACCCAATACCGATGATACTGACAAAGATGAAACCACCAAAACTTCTCAATCTGATCTTCTAGAGAATGAAAACAAGCCACTCCAAGAGCTTAAGAGTCTTGTTCAACAAGCACTCAACAACCATGAATTCTCCAAACCATCCACAAAAGAAGATAAACCACCCACCACCACCACCGTAGCAGCTGCACCCGAAAATGTTACCCCTGCAGAAGAAGAGCCTGTACAACAAAAGGACAAGGAGGAAGTTCCAACAAAGAAAGAGGAAGAAAAAGAACAAGATAAGAAGGAAGATGAAGTGAAGGAAACCGTTGTGGAAAAAGAACAAGAAGAAGGAGATAAGAAGGAAGAGAAAGTGAAGGAAACTGTAGTAGCTGCTGTGGATGAGGATGGAGCAAAAACTGTAGAAGCTATTGAAGAAAGCGTTGTTGCGGTTTCTTCCTCAGTTCCTGTTCCGCAAGAACCCGTTGAATCGAAAGCTGAATCGAAAGATGAAGCTACATTGCCATTACAACCAGAAGAAGTATCCATTTACGGGATACCACTTCTTGCAGACGAGCGAAGCGACGTGATCCTGTTAAAATTTCTGCGTGCAAGAGATTTCAAGGTGAAAGAAGCTTTCACAATGATCAAGGACACAATTCGCTGGAGAAAAGAATTCGGAATAGAAGAGTTGTTGGATGAGAAATTAGGTGATGAATTGGAGAAAGCTGTTTACATGCATGGATTTGATAAGGAAAATCACCCTGTGTGTTATAACATATATGGTGAATTTCAGAATAAGGAATTGTATAAGAAAACGTTTTCTGATGAGGAGAAGAGACAGAATTTTCTTAGATGGAGAATTCAGTTTCTTGAGAAGAGTATTAGGAATTTGGATTTTAACAATGGTGATGCATGTACTATTGTTCATGTCAATGATCTCAAGGATTCTCCTGGACCTGGGAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAGTTGTTTCAAGACAATTACCCTGAGTTTGTGGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCTGTGAATAGGATGATAAGCCCTTTTCTTACACAAAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCAAAATCAACTGAGACCCTTTTGAGCTACATAGCTCCAGAGCAACTTCCAGTGAAGTATGGTGGATTGAGTAAAGATGGTGAATTTGGAAATTCAGATGCTGTTACTGAGGCTACAATAAAGCCAGCATCAAAATATACTGTGGAATTTCCTGTTACTGAGAAATGTTTGGTGTCTTGGGAGGTGAGAGTAATAGGGTGGGAAGTAAAGTATGGTGCAGAATTTGTACCAACCAATGAAGAAAGCTACACTGTAATTGTTCAAAAGGCTAGAAAAGTGAGTTCATCAGAAGAAGCAGTGATTTGCAACAGGTTTAAAGTTGGTGAATCTGGGAAAGTTGTTCTCACCATTGACAACACAAGTTCTAAGAAGAAAAAGCTCTTGTACCGCTTCAAGACCAAGTCTTCACTAGAGGACTGA 1731 0.4055 MSHDQTPPQAEEVLVVANENVPQPEKTTTIPLESEQQDQQPQPEKKNNLVPVVESVTLETHLSKPNTDDTDKDETTKTSQSDLLENENKPLQELKSLVQQALNNHEFSKPSTKEDKPPTTTTVAAAPENVTPAEEEPVQQKDKEEVPTKKEEEKEQDKKEDEVKETVVEKEQEEGDKKEEKVKETVVAAVDEDGAKTVEAIEESVVAVSSSVPVPQEPVESKAESKDEATLPLQPEEVSIYGIPLLADERSDVILLKFLRARDFKVKEAFTMIKDTIRWRKEFGIEELLDEKLGDELEKAVYMHGFDKENHPVCYNIYGEFQNKELYKKTFSDEEKRQNFLRWRIQFLEKSIRNLDFNNGDACTIVHVNDLKDSPGPGKWELRQATKQALQLFQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFGNSDAVTEATIKPASKYTVEFPVTEKCLVSWEVRVIGWEVKYGAEFVPTNEESYTVIVQKARKVSSSEEAVICNRFKVGESGKVVLTIDNTSSKKKKLLYRFKTKSSLED 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04597 576 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 290 465 IPR001251 -
Vivi5g04597 576 Coils Coil 149 169 - -
Vivi5g04597 576 MobiDBLite consensus disorder prediction 81 107 - -
Vivi5g04597 576 ProSiteProfiles GOLD domain profile. 469 570 IPR009038 -
Vivi5g04597 576 SUPERFAMILY CRAL/TRIO domain 300 462 IPR036865 -
Vivi5g04597 576 PANTHER PATELLIN-1 135 573 IPR044834 GO:0008289
Vivi5g04597 576 Pfam CRAL/TRIO domain 299 459 IPR001251 -
Vivi5g04597 576 Gene3D - 220 282 - -
Vivi5g04597 576 MobiDBLite consensus disorder prediction 17 180 - -
Vivi5g04597 576 SMART sec14_4 295 462 IPR001251 -
Vivi5g04597 576 Gene3D GOLD domain 476 570 - -
Vivi5g04597 576 MobiDBLite consensus disorder prediction 135 180 - -
Vivi5g04597 576 MobiDBLite consensus disorder prediction 21 46 - -
Vivi5g04597 576 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 470 569 IPR036598 -
Vivi5g04597 576 MobiDBLite consensus disorder prediction 64 80 - -
Vivi5g04597 576 Gene3D - 295 475 IPR036865 -
Vivi5g04597 576 SUPERFAMILY CRAL/TRIO N-terminal domain 250 291 IPR036273 -
Vivi5g04597 576 SMART CRAL_TRIO_N_2 251 276 IPR011074 -
Vivi5g04597 576 CDD SEC14 296 460 IPR001251 -
Vivi5g04597 576 Pfam CRAL/TRIO, N-terminal domain 246 275 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04597 Vivi-Chr5 144319680 144323040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04597 255 454 Acyl Lipid Metabolism Gene Families AT1G55840 26.794 2.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04597 - - gmx:100788197 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04597 5 144319680 144323040 Vivi5g04597 5 144319680 144323040 ECH
Vivi5g04597 5 144319680 144323040 Vivi3g02328 3 39251871 39254706 PCT