Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02328 ATGGCCGAAGAAGTTCCAAAGAAAACAACAGTAGAAACAGTGCCTCTTGCTGATGAGCCCGAGCCCAAGCTGAATCCAGAGCCCGAGGAAAAGCCCAACACTGAAGAGAATGCTACTGAGACGGAAGCATCAAAGCCTGATGGCGACGAGAAAATACCCGAGTCTGGCTCGTTCAAGGAAGAGACTACCATAGTTGGCGAGCTACCTGAAGCTGAGAAAAAAGCACTTCAAGAACTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTTCAGATTCATCTCCTAGTCCACCGGATGAACAAAAGCCGGAAGCCACACCAGAAAGAGAATCACAACCAGATGCTGAACAAAACAACAAGAAAGAAGAGCAGAACAAAGAACACGTATCAGAATCAGAAACCGAATCTGTTGTTGCTGTTTCAACTGCTGTTGTTGACGTGGCACCACCACCACCAACAACAGCAACTGAAACTGAGAAACCTAACGAAGGAGAAAAGAAAGAAGAAACCGAGGTGGCTGCTTCTTCTATAGAAGATGACGGAGCAAAAACGGTTGAAGCGATTGAAGAAAGCGTTGTAGCGGTCTCTTCATCGTCGATTCCCGAAGAACCAAAAGTGGTGGAAGCTTCTTCACCGGAAGAGGTTTCAATCTGGGGGATCCCACTTCTCTTAGACGAAAGAACCGACGTGATTCTGTTAAAGTTTCTCCGAGCAAGAGACTTCAAAGTGAAAGAATCCTTCACAATGATCAAGAACACAATCCGTTGGAGAAAAGAGTTCAAACTTGAAGAACTATTACTTGATGAAAACCTAAACGATGAATATCTAGAAAGAACCGTTTACATGCAAGGACACGACAAAGAAGGCCACCCTGTTTGTTACAACATTTACGGAGAGTTTGATAACAAAGAAGTTTACAAGAAAACATTCTCCGATGAAGAGAAGAGACAAAATTTTCTGAAATGGAGAATTCAGTTTCTGGAGAAAAGTATCAGAAAGCTGGATTTTAACCCTGGTGGCATTTCCACCATTGTTCAGGTGAATGATCTAAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGACAAGCTACCAAACAGGCCCTTCAATTGCTTCAAGATAATTACCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTATTTGGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTCGTTTTTGCTGGACCTTCTAAATCAGCTGAAACACTTCTAAGATACATAGCCCCTGAGCAACTTCCGGTTAAATACGGTGGACTAAGCAAAGACGGTGAATTCGGAATCACCGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACATACTGTGGAATTTCCGGTTACTGAGAATTGTTTAATCTCTTGGGAGGTAAGAGTAATTGGATGGGACATAAGCTATAGTGCAGAGTTTGTACCAAGTTCAGAAGGAAGCTATACTGTGATAATCCAGAAGAGTAGAAAAGTTGGTGCATCAGAAGAACCTGTGATTTGCAACAACTACAAAATTGATGAACCTGGGAAAGTTGTTTTGACCATTGACAATTCAAGCTCTAAGAAGAAGAAGCTCTTGTATCGTTTGAAGACAAAAACTTCAAATTCTGATTAG 1677 0.4186 MAEEVPKKTTVETVPLADEPEPKLNPEPEEKPNTEENATETEASKPDGDEKIPESGSFKEETTIVGELPEAEKKALQELKQLIQEALNKHEFSSDSSPSPPDEQKPEATPERESQPDAEQNNKKEEQNKEHVSESETESVVAVSTAVVDVAPPPPTTATETEKPNEGEKKEETEVAASSIEDDGAKTVEAIEESVVAVSSSSIPEEPKVVEASSPEEVSIWGIPLLLDERTDVILLKFLRARDFKVKESFTMIKNTIRWRKEFKLEELLLDENLNDEYLERTVYMQGHDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKRQNFLKWRIQFLEKSIRKLDFNPGGISTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLISWEVRVIGWDISYSAEFVPSSEGSYTVIIQKSRKVGASEEPVICNNYKIDEPGKVVLTIDNSSSKKKKLLYRLKTKTSNSD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02328 558 MobiDBLite consensus disorder prediction 87 102 - -
Vivi3g02328 558 MobiDBLite consensus disorder prediction 105 136 - -
Vivi3g02328 558 MobiDBLite consensus disorder prediction 65 79 - -
Vivi3g02328 558 Coils Coil 76 96 - -
Vivi3g02328 558 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 271 447 IPR001251 -
Vivi3g02328 558 MobiDBLite consensus disorder prediction 162 186 - -
Vivi3g02328 558 Pfam CRAL/TRIO domain 282 441 IPR001251 -
Vivi3g02328 558 MobiDBLite consensus disorder prediction 1 186 - -
Vivi3g02328 558 Gene3D GOLD domain 457 552 - -
Vivi3g02328 558 Pfam CRAL/TRIO, N-terminal domain 215 255 IPR011074 -
Vivi3g02328 558 PANTHER PATELLIN-1 120 554 IPR044834 GO:0008289
Vivi3g02328 558 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 453 551 IPR036598 -
Vivi3g02328 558 CDD SEC14 279 442 IPR001251 -
Vivi3g02328 558 SMART CRAL_TRIO_N_2 231 256 IPR011074 -
Vivi3g02328 558 SUPERFAMILY CRAL/TRIO domain 282 444 IPR036865 -
Vivi3g02328 558 Gene3D - 218 456 IPR036865 -
Vivi3g02328 558 ProSiteProfiles GOLD domain profile. 451 552 IPR009038 -
Vivi3g02328 558 MobiDBLite consensus disorder prediction 22 57 - -
Vivi3g02328 558 SUPERFAMILY CRAL/TRIO N-terminal domain 58 271 IPR036273 -
Vivi3g02328 558 SMART sec14_4 277 444 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02328 Vivi-Chr3 39251871 39254706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02328 235 436 Acyl Lipid Metabolism Gene Families AT5G47730 27.570 3.50e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02328 - - gmx:100805585 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02328 3 39251871 39254706 Vivi3g02328 3 39251871 39254706 ECH
Vivi5g04597 5 144319680 144323040 Vivi3g02328 3 39251871 39254706 PCT