Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04593 ATGGCAGCTGAGCTAGTCAATGCTGCAACAAGTGAGAAACTGGCAGAAATTGATTGGACGAAAAATATTGAAATCTCTGAATTAGTTGCCCGCGATCAAAGGAAAGCTAAAGATGTTGTTAAAGCTATAAAAAAGAGATTGGGTAACAAGAACCCCAACACTCAACTTTATGCTGTCATGTTGCTGGAAATGTTGATGAACAACATAGGAAATCACATTCATGAGAAGGTGGTTGATGCCGAAATTATTCCTATTCTAGTGAAAATTGTAAAGAAAAAGTCAGATTTGCCTGTCAGGGAGCGAATATTTCTTCTACTAGATGCAACTCAAACATCCCTTGGCGGTGCTACTGGAAAGTTTCCGCAGTATTATAAAGCATATTATGATTTGGTGAGTGCCGGGGTGCAATTTCCGCAAAGAGCTCAACTTGTTCAATCAAATCGTCCTAGTTCAGAACCAAATAGGACTAATAATGTACCCAAAAAGGAGCAGGTCCCACTTAGACATGGAGGGGTTCCTCAAAAAGCAGAACGCAACACTGTTCCTGAATCTAGCATTATCCAAAAGGCTAGTAATGCATTGGAAGTTCTAAAAGAAGTCCTTGATGCCATTGATGCCAAGCAGCCTCAGGGAGCAAGAGATGAATTCACCCTTGACCTTGTTGAGCAATGTTCATTTCAAAAGCAGAGGGTAATGCATCTTGTGATGACTTCTCGAGACGAGAGGATAGTTTCCCGAGCAATAGAAGTGAATGAACAGCTTCAAAAAGTTCTAGATAAACATGATGACCTTCTTTCTAGCAAGGTTACAACAACCGTGAATCACTTCGACTGTGATGAAGAGGAGGAAGAAGAACCCGAACAATTATTCAGAAGATTACGCAAAGGAAAAGCTTGTGTAAGGCCTGAAGATGAAGAAACTGAACCTCAGAGGTTCCCTCGATTGAGTTTGCTTGAAGAGAGACTCAACCGTCCACTAATACGATCACTAGAACCAACTCAGGAAGCTCATGCTTGTCCTGTACCTGTTGTGGTTCCACCTCCAAGTGCAAAGCTTCCTCCTGTTACAATTCCACCGCCACCTTCAAAGCACTCAGAGAGAGAAAGATATTTTCAGCATAATAAGGACAATGGCACTTTGGCTGGCCACATCAGAGACCTCTCTTTACACAGTCGCAATGGCAGCAGCTCGCAGAGTGGAAGCTTTGATTTTAGTGATTGA 1221 0.4218 MAAELVNAATSEKLAEIDWTKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNTQLYAVMLLEMLMNNIGNHIHEKVVDAEIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGATGKFPQYYKAYYDLVSAGVQFPQRAQLVQSNRPSSEPNRTNNVPKKEQVPLRHGGVPQKAERNTVPESSIIQKASNALEVLKEVLDAIDAKQPQGARDEFTLDLVEQCSFQKQRVMHLVMTSRDERIVSRAIEVNEQLQKVLDKHDDLLSSKVTTTVNHFDCDEEEEEEPEQLFRRLRKGKACVRPEDEETEPQRFPRLSLLEERLNRPLIRSLEPTQEAHACPVPVVVPPPSAKLPPVTIPPPPSKHSERERYFQHNKDNGTLAGHIRDLSLHSRNGSSSQSGSFDFSD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04593 406 MobiDBLite consensus disorder prediction 341 361 - -
Vivi5g04593 406 Gene3D - 2 136 IPR008942 -
Vivi5g04593 406 Coils Coil 187 207 - -
Vivi5g04593 406 MobiDBLite consensus disorder prediction 389 406 - -
Vivi5g04593 406 PANTHER TOM1-LIKE PROTEIN 1 305 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vivi5g04593 406 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vivi5g04593 406 MobiDBLite consensus disorder prediction 143 181 - -
Vivi5g04593 406 SUPERFAMILY GAT-like domain 143 267 - -
Vivi5g04593 406 SUPERFAMILY ENTH/VHS domain 4 140 IPR008942 -
Vivi5g04593 406 MobiDBLite consensus disorder prediction 143 161 - -
Vivi5g04593 406 CDD VHS 2 130 - -
Vivi5g04593 406 CDD GAT_GGA-like_plant 186 264 - -
Vivi5g04593 406 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Vivi5g04593 406 Pfam GAT domain 192 266 IPR004152 GO:0035091|GO:0043130
Vivi5g04593 406 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vivi5g04593 406 MobiDBLite consensus disorder prediction 341 406 - -
Vivi5g04593 406 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Vivi5g04593 406 Gene3D - 179 274 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04593 Vivi-Chr5 144252143 144257395 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04593 - - gmx:100802949 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04593 5 144252143 144257395 Vivi5g04593 5 144252143 144257395 ECH
Vivi5g04593 5 144252143 144257395 Vivi3g02335 3 39325022 39329450 PCT