Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04466 ATGTCTACTCATGGTGGTAATAATGCGGAATCGCCGAGAGCAGCACAATCGGTGCAGATGCGGAGAGCACCGTCAAGAGGTGCGGCGACGACATTCTCGTTGGAGGTATTCGATAACGAAGTCGTGCCTTCTTCACTCGCTACAATCTCTCCGATACTCAGAGTCGCGAGCGAGATCGAATCAGAGCGTCCTAGAGTTGCTTATCTATGTAGGTTTTACGCATTCGAGAAAGCGCACAGGCTGGATCAAAGTTCCACCGGGCGTGGTGTTAGGCAGTTTAAGACGTTGTTGCTGCAAAGATTGGAGAGGGACAATGCAACTAGTCTTGCCTCTCGAGTTAAGAAGACAGATGCAAGGGAAATCCAGGCTTATTATCAACAATACTATCAACAATATGTCAGAGCTCTTGACCAAGCGGATCAAGAAGACAGTACCCAGCTCAGCAAAGCTTACCAGACTGCTGGGGTGCTCTTTGAAGTGCTTTGTGCTGTTAATAAGACTGAGAAGGTCGAAGAAGTAGCTCCTGAGATTATGGCAGCTGCTAAAGATGTCCAGGAAAAAACGGAGATTTATATACCTTATAATATTCTTCCTCTGGATTCTGCTGGTGCTTCTCTGCCCATTATGCAGTTTGAAGAGATTAGGGCTGCTGTTTCTGCGCTCTGGAACACTCGTGGCTTGAACTGGCCTAACTCATTTGAGCAACCGAGGCAGAGAGGTGCAGATTTAGACATGCTTGATTGGCTTAGAGCAATGTTTGGTTTCCAGAAGGACAGCGTGAGGAATCAAAGAGAACATTTGATTCTGCTTCTAGCTAACTCTCACATAAGGCTACACCCAAAACCCGAGCCTTTTAACAAGCTCGATGACCGTGCTGTTGATTTTGTGATGAAAGTTCTCTTTAAGAATTACAAAACATGGTGCAAATTCTTGGGACGAAAGCATAGTTTGCGACTGCCTCAAGGTCAACCAGACATACAGCAGAGGAAGTTGCTTTATATGGGCTTGTATCTTCTCATTTGGGGTGAAGCATCCAATGTCCGCTTCATGCCAGAGTGTCTATGCTATATATTTCACAATATGGCATATGAACTGCATGGTTTATTGGCTGGAAATGTCAGCATTGTCACTGGCGAAAATATCAAGCCTTCTTATGGCGGAGATGATGAGGCATTCCTACGAAAGGTTATCACACCCATATACCGAGTAATTGAAAAGGAAGCTAAGAAGAGCAGTAATGGAAAAGCTTCTCACTCAGCATGGTGCAACTATGATGATCTAAATGAGTATTTCTGGACACTTGATTGCTTTTCTCTTGGATGGCCCATGCGTGATGATGGCGATTTTTTTATATCTGACCCACAATCTTCCGGCAAAACTATTGGTTTTGATGTAAAATTGATAGATGTGAACCGAACTTGTAAAGTTACAAAGGGAGGACAAGTTGTCAAGTACACTGCTATGTTAGCATGTGGCAACTATAATGGTGTTGTTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTTCCAGTTGCCCTCCAAAAGGCATATGAGAAGTGCTTTCAGAATTTGCATTATGTAGAGCGACATGAGGAGCACACAATTGCACATGCAATACAAACATCTTATAAAAAAACCAAGGTGTATCTCTGGCCTGCTTCCACTGCAACTGGCATGAAAGCTGGTAGAATAGTCCAAACCATACTGCATTTAGGTGGTTTTAAGAATGTCAAGTCAAAGGTTGTTGGTTCAAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCGCTTAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCCGAACTGTGGTTGAGAAGTATTTGTTGTGA 1863 0.438 MSTHGGNNAESPRAAQSVQMRRAPSRGAATTFSLEVFDNEVVPSSLATISPILRVASEIESERPRVAYLCRFYAFEKAHRLDQSSTGRGVRQFKTLLLQRLERDNATSLASRVKKTDAREIQAYYQQYYQQYVRALDQADQEDSTQLSKAYQTAGVLFEVLCAVNKTEKVEEVAPEIMAAAKDVQEKTEIYIPYNILPLDSAGASLPIMQFEEIRAAVSALWNTRGLNWPNSFEQPRQRGADLDMLDWLRAMFGFQKDSVRNQREHLILLLANSHIRLHPKPEPFNKLDDRAVDFVMKVLFKNYKTWCKFLGRKHSLRLPQGQPDIQQRKLLYMGLYLLIWGEASNVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPIYRVIEKEAKKSSNGKASHSAWCNYDDLNEYFWTLDCFSLGWPMRDDGDFFISDPQSSGKTIGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPASTATGMKAGRIVQTILHLGGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04466 620 MobiDBLite consensus disorder prediction 1 15 - -
Vivi5g04466 620 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g04466 620 Pfam Vta1 like 49 172 IPR039431 -
Vivi5g04466 620 Gene3D - 34 189 IPR023175 -
Vivi5g04466 620 SMART FKS1_dom1_2 328 444 IPR026899 -
Vivi5g04466 620 SUPERFAMILY Ribosomal protein S5 domain 2-like 532 610 IPR020568 -
Vivi5g04466 620 Gene3D - 457 523 - -
Vivi5g04466 620 ProSiteProfiles S5 double stranded RNA-binding domain profile. 463 526 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g04466 620 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 330 441 IPR026899 -
Vivi5g04466 620 Pfam Ribosomal protein S5, N-terminal domain 463 527 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g04466 620 Gene3D - 528 617 IPR014721 -
Vivi5g04466 620 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 109 517 - -
Vivi5g04466 620 SUPERFAMILY dsRNA-binding domain-like 463 529 - -
Vivi5g04466 620 FunFam callose synthase 3 34 191 - -
Vivi5g04466 620 FunFam 30S ribosomal protein S5 528 619 - -
Vivi5g04466 620 Pfam Ribosomal protein S5, C-terminal domain 542 609 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04466 Vivi-Chr5 142601441 142609628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04466 21 450 Glycosyltransferase AT2G31960 65.661 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04466 K11000 - vvo:131602857 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04466 5 142601441 142609628 Vivi3g02452 3 41175749 41189900 PCT
Vivi3g02451 3 41175747 41189900 Vivi5g04466 5 142601441 142609628 PCT