Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02800 ATGAACAAGCCTCCCCGAGAAGATGACCGCAACAACACTCCTACTTCTCTCGACTCCAGATTCAGCCAAACCCTACGAAATGTTCAAGGGCTACTCAAAGGTCGTAGCATGCCCGGTAAAGTATTGCTGAGCAAAAGGTCAGAGCCATTAGATAACGCTATCTCAAAGGTATCCTCAACGTTTTACAAAAGGAGTTACTCGCAGAATGATGCTGGCACGAGCGATCACCCATCTGCTGCAGTAGAGGAGGAAGTTCAGAGTACAAGCAAATCAGCTAGTGTTGTTAATGTTAGTAAGTTGAAAATATCAACCTCCCTTGTGGAAAGAGATAACTTATCTGAAGATATTCGCAAATATACGATGGGCGCTAGAGCTACGGACTCAGCGAGAGTTACAAAGTTTACTAAAGTGCTTTCTGGACCAGTGGTTATATTAGACAAATTGCGAGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTAAAGTGTGGAGACTCCTCTTGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTTCTGAGAAGGAAGCGTGGAGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGCTTCAGAACGTTCGGATGACGAGGTCACCATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCTGATGTTCCTTTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTCGTTACACCATTTTTAGTTGTTTTTATATCAGAATACTTAGAAGGAGGTATAGATGATTGGTCCATGTCTGATTTATCTTCCGACAAAATCTCTAATATAGAGGCTGACTGCTACGGGTGTTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCACAACCTGGAATTCAAAGGCTTGTTTTTAAATTAAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCACAACATATAGAGGATCAGGGACTTGAGTTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCATTTGAGCTCATCACACGCCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTCGTGTATATATTTGCCAGTTTCCTTCTAACGTGGTCAGACAAGCTACCGAGCTTGGAATTCCAGGAGTTAGTAATGTTCCTTCAACACCTTCCAACTCAGAACTGGACTCACCAGGACCTTGATATGGTGCTTTCTCGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGTCATTTCTCTAGCTGA 1359 0.4312 MNKPPREDDRNNTPTSLDSRFSQTLRNVQGLLKGRSMPGKVLLSKRSEPLDNAISKVSSTFYKRSYSQNDAGTSDHPSAAVEEEVQSTSKSASVVNVSKLKISTSLVERDNLSEDIRKYTMGARATDSARVTKFTKVLSGPVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLRRKRGEYLDCISQYYDIPASERSDDEVTMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEYLEGGIDDWSMSDLSSDKISNIEADCYGCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSQHIEDQGLEFLQFAFRWFNCLLIREIPFELITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLPSLEFQELVMFLQHLPTQNWTHQDLDMVLSRAFMWHSMFNNSPSHFSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02800 452 Gene3D - 130 181 - -
Vivi5g02800 452 FunFam TBC1 domain family, member 22B 186 316 - -
Vivi5g02800 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 316 - -
Vivi5g02800 452 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g02800 452 FunFam TBC domain containing protein 317 452 - -
Vivi5g02800 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 342 IPR035969 -
Vivi5g02800 452 SMART tbc_4 152 408 IPR000195 -
Vivi5g02800 452 FunFam TBC1 domain family member 129 181 - -
Vivi5g02800 452 Pfam Rab-GTPase-TBC domain 159 403 IPR000195 -
Vivi5g02800 452 Gene3D - 317 452 - -
Vivi5g02800 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Vivi5g02800 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 96 425 - -
Vivi5g02800 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02800 Vivi-Chr5 114721914 114726869 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02800 K20360 - gmx:100819281 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07399 2 218224586 218228817 Vivi5g02800 5 114721914 114726869 PCT