Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07399 ATGAAGAACAACGATAACAACAACAACAAAGACACTACCATAGGAATCCTCGATTCTCGTTTCAACCAAACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGTATTCCTGGGAAAATATTATTGAGCCCGAGGGATCCGATCGATAATTCAAGCTTATGCTCGCCGACTTTCCAAAGGAGTTATAGTGATGCCGGTACAAGTAATCGCGCAATTGAGACAGTAGAGGAGGAAGTTCGAAGCGGAAGCAAATCATTTGGTGGTATTACTGTTGATAGTAAATCAAAAACTTCGACCTCGCATGTAGAGAATCCGTCTGAGGAGGTACAAGTACGGAAAACTTCCATGGGTGCTAGAGCTACTGATTCTGCAAGAGTTATGAAGTTCACAAAGGCGCTTTCTGGAACAGTGGTTATATTAGACAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGAGTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGGCTCGAGTATCTTGATTGTGTTTCTCAGTACTATGATATCCCTGATACAGAACGATCAGATGATGAAATCAGCATGCTTCGCCAGATTGGCGTTGATTGTCCAAGAACTGTACCTGATGTTTCATTCTTCCAACAACCTCAAGTTCAGAAATCACTGGAGCGTATTCTTTACGCATGGGCCATTCGGCATCCAGCAAGTGGATATGTTCAGGGGATAAATGACCTTGTCACGCCATTTTTTGTTGTTTTCCTATCTGAATACTTAGAAGGAAGCATAGATACTTGGACAATGTCCGATTTATCTTCAGATAAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCGAAATTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCGGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAACCTGTCTCAAGCCATATGGAGAATCAGGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGTTACCCTTCCAACTTGTCACGCGCCTTTGGGACACATATCTAGCCGAAGGTGATGCCTTACCAGACTTCCTTGTGTACATATTTGCGAGTTTTCTTCTTACGTGGTCAGACGAAATTCAGAAGCTTGATTTTCAAGAGTTAGTAATGTTCCTTCAACACCTTCCAACTCAGAACTGGACTGATCAGGAGCTGGAGATGGTACTCTCTCGAGCGTTTATGTGGCACAGCATGTTCAACAATTCTCCTAGCCATTTGGCTACCTAA 1347 0.4284 MKNNDNNNNKDTTIGILDSRFNQTLRNVQGLLKGRSIPGKILLSPRDPIDNSSLCSPTFQRSYSDAGTSNRAIETVEEEVRSGSKSFGGITVDSKSKTSTSHVENPSEEVQVRKTSMGARATDSARVMKFTKALSGTVVILDKLRELAWSGVPDYMRPTVWRVLLGYAPTNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEISMLRQIGVDCPRTVPDVSFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFFVVFLSEYLEGSIDTWTMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSSHMENQGLEFLQFAFRWFNCLLIRELPFQLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDEIQKLDFQELVMFLQHLPTQNWTDQELEMVLSRAFMWHSMFNNSPSHLAT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07399 448 MobiDBLite consensus disorder prediction 84 107 - -
Vivi2g07399 448 SMART tbc_4 148 404 IPR000195 -
Vivi2g07399 448 MobiDBLite consensus disorder prediction 87 107 - -
Vivi2g07399 448 Gene3D - 128 179 - -
Vivi2g07399 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 110 421 - -
Vivi2g07399 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 130 338 IPR035969 -
Vivi2g07399 448 FunFam TBC domain containing protein 313 448 - -
Vivi2g07399 448 Pfam Rab-GTPase-TBC domain 155 400 IPR000195 -
Vivi2g07399 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 187 312 - -
Vivi2g07399 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Vivi2g07399 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Vivi2g07399 448 Gene3D - 313 448 - -
Vivi2g07399 448 FunFam TBC1 domain family member 125 177 - -
Vivi2g07399 448 FunFam TBC domain containing protein 181 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07399 Vivi-Chr2 218224586 218228817 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07399 K20360 - gmx:100785695 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07399 2 218224586 218228817 Vivi2g07399 2 218224586 218228817 ECH
Vivi2g07399 2 218224586 218228817 Vivi5g02800 5 114721914 114726869 PCT