Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02572 ATGGCTGCGAATTCGTCTAATGGAGATCATCAAACAACAGCTAAGCAACCTCCATTGCCATCTCCCTTGCGTTTCTCCAAGTTCTTTCAGTCTAACATGAGAATCTTGGTTACTGGAGGAGCTGGGTTCATTGGTTCTCACCTTGTCGATAGATTGATGGAAAATGAAAAGAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCACCCAAGATTTGAGCTTATCCGTCATGATGTCACTGAGCCTTTGATGCTTGAGGTGGATCAGATCTACCATCTTGCATGTCCCGCATCGCCTATTTTCTACAAATATAATCCCGTGAAGACAATCAAGACAAATGTGATAGGCACTCTGAACATGCTTGGGCTTGCAAAACGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCCGAGGTATATGGGGATCCTCTTGAGCATCCTCAACCTGAAACCTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGCTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGAATAGAAATACGAGTTGCAAGAATCTTCAACACATATGGGCCGCGCATGAATATCGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGTTGCGTGGTGAATCCTTGACAGTCCAATCTCCAGGAACGCAAACTCGCAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGGAGGATCAGACACCGGTCCAATCAATCTTGGAAACCCGGGTGAATTCACTATGCTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAAATGTGGAGATAAAGATAGTGGAAAACACTCCTGATGATCCAAGACAGAGAAAACCAGACATAACCAAAGCACAGGAATTGCTTGGCTGGGAACCAAAGGTCAAGCTGAGCGAAGGTCTTCCTCTTATGGAAGGAGATTTCCGTTTGAGGCTTGGAGTTGAGAAGAACATCTAA 1041 0.4438 MAANSSNGDHQTTAKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLMLEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAETVKELINPNVEIKIVENTPDDPRQRKPDITKAQELLGWEPKVKLSEGLPLMEGDFRLRLGVEKNI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02572 346 CDD UGD_SDR_e 33 337 - -
Vivi5g02572 346 FunFam UDP-glucuronic acid decarboxylase 6 32 341 - -
Vivi5g02572 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 20 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vivi5g02572 346 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g02572 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 334 IPR036291 -
Vivi5g02572 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Vivi5g02572 346 Gene3D - 155 339 - -
Vivi5g02572 346 Gene3D - 30 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02572 Vivi-Chr5 108434003 108438240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02572 30 329 Miscellaneous Gene Families AT1G02000 24.478 4.33e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02572 K08678 - gmx:100790835 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07300 2 216797132 216800779 Vivi5g02572 5 108434003 108438240 PCT