Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07300 ATGGCGACGAACTCTTCTAATGGAGATCACCAATTGACTACAAAGCAACCTCCCCCACCATCTCCGCTGCGTTTTTCCAAATTCTTTCAGTCCAATATGAGAATTTTGGTCACTGGAGGAGCTGGTTTTATTGGTTCTCACCTAGTTGACAGATTGATGGAAAATGAGAAAAATGAGGTAATTGTAGCTGATAACTACTTCACTGGATCTAAAGAAAACCTTAGAAAATGGATTGGTCATCCTCGATTTGAGCTAATTCGTCATGACGTGACAGAACAACTGTTGGTTGAGGTTGATCGGATCTACCATCTTGCATGCCCTGCTTCTCCGATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACAAATGTAATCGGAACACTGAACATGCTTGGCCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCTACCTCAGAAGTATATGGAGACCCTCTAGTGCATCCACAGCCGGAAAGCTATTGGGGAAATGTCAATCCTATTGGTGTTCGGAGTTGCTATGATGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATAGAAATCCGCATTGCCAGAATCTTCAACACATATGGTCCACGCATGAATATCGACGATGGACGTGTTGTCAGCAACTTTATTGCTCAAGCACTTCGCGGCGAACCCCTAACTGTCCAACTTCCAGGAACACAAACTCGCAGTTTCTGCTATGTTTCTGACATGGTTGATGGCCTTATTCGTCTCATGGAAGGAGAAAACACCGGTCCAATCAACATTGGGAACCCAGGTGAATTTACTATGACTGAGCTTGCTGAGAATGTGAAAGAGCTTATTAATCCAGATGTGGAGATAAAGATGGTGGAGAACACTCCAGACGATCCTCGTCAAAGAAAACCAGACATAACAAAAGCAACGGAATTGCTTGGTTGGGAACCAAAGGTCAAGTTGCGCGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCAGAGGCTCGGGGTTACCAAAAAGAACTAA 1041 0.438 MATNSSNGDHQLTTKQPPPPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKENLRKWIGHPRFELIRHDVTEQLLVEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAENVKELINPDVEIKMVENTPDDPRQRKPDITKATELLGWEPKVKLRDGLPLMEEDFRQRLGVTKKN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07300 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 20 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vivi2g07300 346 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g07300 346 CDD UGD_SDR_e 33 337 - -
Vivi2g07300 346 FunFam UDP-glucuronic acid decarboxylase 6 32 341 - -
Vivi2g07300 346 Gene3D - 30 160 - -
Vivi2g07300 346 Gene3D - 161 342 - -
Vivi2g07300 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 340 IPR036291 -
Vivi2g07300 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07300 Vivi-Chr2 216797132 216800779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07300 30 345 Miscellaneous Gene Families AT1G02000 24.217 3.40e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07300 K08678 - qsu:112026144 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07300 2 216797132 216800779 Vivi2g07300 2 216797132 216800779 ECH
Vivi2g07300 2 216797132 216800779 Vivi5g02572 5 108434003 108438240 PCT
Vivi5g02574 5 108434003 108437970 Vivi2g07300 2 216797132 216800779 PCT