LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g02472	ATGTTTTTGACATGTGTTTTGTGGTATTCCCAGTTTTTGTTAACGGAAATCATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGCGCCGAAGAGATGGATTTGACGGATCAGCAGTTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTATGGTGTTGGCACCACATAATGGACATGGCCGAGAAGGATGATACTGATGGGCGATGCCCTGCTTGTCGTTCTCCTTATGACAAGGAAAAGATTGTTGGGACGGCGTCAAAGTGTGAAAGATTGCTGAATGAAATTAATATGGAGAAAAAGGTGAAGAATCAAAAATCAAAATCAAAATCTGCTGATGGACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGGATCTGGCAGATGAAGATCTTCTCCAGAAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGGACGGCAGCTGGTGTCATTCAACAGTTTCCTAATGATACTTGCAGTGTATATATTACTTATTTAAAGGAAGAGGAAGCAATTCGGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAAACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATCAACCCTGATTGTCTATATCTGCACGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATATCAGCTTACACTAGAGTTCAACAAATCACTGGTGCCACAACTAATATGCAACGCCGGTCGGGGAATGTATTACCTCCTCCTCTGGATGATTGCACAGATTATTCGACAGAAAGGCCCATTATTAATAGTGCTCCAACTAACTCTGTCTACACAGTGCGAAATTCGCCTCCAAATGGAATCAATGGGAAACATGTACCTCTTCCCACTAGTACTGCATGGGGTACACAGGCTACAAGTTGTCAGCCCCCTGTTGGAGGTCTATCGCACCCATCTGTTTTGTCCAAGCCAAAGCCTGATACAGTTAACAGCACACTTGCCTTTTCTACTGCCGTTACGGGAACAATTCAGGCTTCTGCAGCACAGGGTGATGGTTCAAGAAGGCCGCCATCAAGTGATGGGAGTCATAATACATTACCTAGGGTGAAAAGTGAATTGCCAAAACCTAGTAAACAATATAATAGCTTGGACAGTCTTACCAGTGCAGGTGAAAAAATTTCAGCTTGTGCTGTTTCTCCTGCACCTGTCAATTTGAAGAGTGAGCTGTCTTCTCGACCATTATCACGAGATAATGGTAGAGGCAATTGTACTATAACAAACACATTAAATTCTACTAACATTACTGGACATTCTTTTAACTCTGGTCCTGAGGAAGCAGTGCCTGCTACCAATGAAGTGATTCGGAATTTGTCCAGTGAGTTCTCCTCAATTAACATTGGTAGAAGTTCCTCAATTGAAAACTGTGGTATAACCAAACCTAGTAACCGGCCAACTGATGATGTCATGACTAAATCTCCTCAAATTCAAGAAGGATCACAATATGATGTTGATAGATTTAAAGACCCAATAACAACAAATGTGGTTGGTAAAACTTCCTCATCAGATAGTGGGATTTTTAGTCCAAAGGAACAATGTGGAGGGATATTGAACTCTCAATCTCAAGTAGTATCAGATACAGCTGATATCGAAGATGATGTAGCATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCGTTCTTATTTGCCTAAGGCAACAAATTTCCTTAATGTATCAAAACTTTCTAGCCCTTGTATGCCATATGGCGAACCTTGTACTGCTGGAAATGCTGGTTCTCTATCTTCTGAAGATAGAGTTCGGGAGGAATCTAATTTACATTCGTCTAGCATGTTATGTAATGGCTATCCTGAGAAATTGATCCGCGGAACCTCTAACGGCTTTCTTCATGATGAAAGAAACAGGCAAAGCATTGGACGGTTGGTTGGTGATGCCGTTGATACTGGGTGTGATGAGTCAATTGATAAGGGGGAAAGTAGTATAATCTCAAATATTCTGTCCATTGATTTTGATCCATGGGATGACTCCCTAGCATCACCCCATAATATAGTGAAGCTGTTGAGTGAAAATACTGATAGCCAGCCCGCTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAATAATAACCAGTCAAGATTCTCTTTTGCAAGACAGGAAGAATCTGAAATTCAAACTTTTGATGTGCATCCGTCTTATGCTTTCAACCAGCAACAGTCTAAGAGCCACACACTCAATCAGAATCTGGCAGAAAGAGACTTTTATATGGAAAAGTTGGGCATTGCAAATGGCTTTCCTACCAGTAATTTTGAGGAAGCTGAAAATATAAGCAGTGCTCATTCAACTGCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTTTCAGCTCCGCCAGGTTTTTCAATTCCAAGCAGGCTGCCGCCTCCTGGTTTTTCTTCACATGAGAGATCAGAGCAGACTTTTGACTCCCTATCTGGGAATTCCTTACTTGATCATTCTTCTTTTTTGAGAAATTCACATCAGACACACTCAGCTGGAAATATTGGTGGCACAGGCGACATTGAATTTATGGATCCAGCTATTTTGGCAGTTGTTGGCAAGGGGAGACTTCAAGGTGCGCAGAACAGCCAATCATTGGACATGCGTTCAAATTTCAATCCACAATTAAATAATTACTTCGACAATGAAGCCAGACTACAGTTCCTGATGCAAAGATCTCTCACTCAGCAGCAAAACAGGTTTCCTGAAATTGGGAATACTTATTCTCAACTTGGTGATTCATATGGTATTTCTTCTAGGTTAGATCAATCTCAAGTCAGTAACCTAGCCCCTTTCCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAGTCTTTTCTAATGGCCAATGGAATGGGTGGAATGAGATGCAGAGTGGGAATGGTCTGGGGGTTGCCGAACTTTTGAGGAACGAAAGACTTGGATTTAACAAGTTTTACCCAGGATTTGATGATTCAAAATATCGGATGCCAAATTCTGGGGATATCTACAACAGAACTTTTGGCATGTGA	3141	0.4126	MFLTCVLWYSQFLLTEIMSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLNEINMEKKVKNQKSKSKSADGRKQLSSVRVIQRNLVYIVGLPLDLADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYLKEEEAIRCIQNVHGFVLEGKPLRACFGTTKYCHAWLRNSPCINPDCLYLHEVGSQEDSFTKDEIISAYTRVQQITGATTNMQRRSGNVLPPPLDDCTDYSTERPIINSAPTNSVYTVRNSPPNGINGKHVPLPTSTAWGTQATSCQPPVGGLSHPSVLSKPKPDTVNSTLAFSTAVTGTIQASAAQGDGSRRPPSSDGSHNTLPRVKSELPKPSKQYNSLDSLTSAGEKISACAVSPAPVNLKSELSSRPLSRDNGRGNCTITNTLNSTNITGHSFNSGPEEAVPATNEVIRNLSSEFSSINIGRSSSIENCGITKPSNRPTDDVMTKSPQIQEGSQYDVDRFKDPITTNVVGKTSSSDSGIFSPKEQCGGILNSQSQVVSDTADIEDDVASFDNQRLKDPEVCRSYLPKATNFLNVSKLSSPCMPYGEPCTAGNAGSLSSEDRVREESNLHSSSMLCNGYPEKLIRGTSNGFLHDERNRQSIGRLVGDAVDTGCDESIDKGESSIISNILSIDFDPWDDSLASPHNIVKLLSENTDSQPAPLKKSSSWKVQNNNQSRFSFARQEESEIQTFDVHPSYAFNQQQSKSHTLNQNLAERDFYMEKLGIANGFPTSNFEEAENISSAHSTASSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQTFDSLSGNSLLDHSSFLRNSHQTHSAGNIGGTGDIEFMDPAILAVVGKGRLQGAQNSQSLDMRSNFNPQLNNYFDNEARLQFLMQRSLTQQQNRFPEIGNTYSQLGDSYGISSRLDQSQVSNLAPFPQLSMQQSTNAVFSNGQWNGWNEMQSGNGLGVAELLRNERLGFNKFYPGFDDSKYRMPNSGDIYNRTFGM	1046

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g02472	1046	CDD	RRM_CNOT4	122	221	IPR034261	-
	Vivi5g02472	1046	MobiDBLite	consensus disorder prediction	493	515	-	-
	Vivi5g02472	1046	MobiDBLite	consensus disorder prediction	829	855	-	-
	Vivi5g02472	1046	Gene3D	-	128	209	IPR012677	-
	Vivi5g02472	1046	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	129	207	IPR000504	GO:0003723
	Vivi5g02472	1046	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	15	94	IPR013083	-
	Vivi5g02472	1046	ProSiteProfiles	Zinc finger RING-type profile.	26	74	IPR001841	-
	Vivi5g02472	1046	Pfam	RING/Ubox like zinc-binding domain	26	78	-	-
	Vivi5g02472	1046	FunFam	RNA binding (RRM/RBD/RNP motifs) family protein	128	209	-	-
	Vivi5g02472	1046	SUPERFAMILY	RING/U-box	18	83	-	-
	Vivi5g02472	1046	MobiDBLite	consensus disorder prediction	365	387	-	-
	Vivi5g02472	1046	SUPERFAMILY	RNA-binding domain, RBD	121	207	IPR035979	GO:0003676
	Vivi5g02472	1046	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	127	213	IPR000504	GO:0003723
	Vivi5g02472	1046	SMART	rrm2_1	128	209	IPR003954	GO:0003676
	Vivi5g02472	1046	MobiDBLite	consensus disorder prediction	365	404	-	-
	Vivi5g02472	1046	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	18	1040	IPR039780	GO:0004842\|GO:0030014
	Vivi5g02472	1046	CDD	mRING-HC-C4C4_CNOT4	25	75	IPR039515	-
	Vivi5g02472	1046	MobiDBLite	consensus disorder prediction	321	349	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g02472	Vivi-Chr5	104977308	104984774	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g02472	K10643		-	gmx:100813427	1520.75

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi2g07098	2	213331248	213340697	Vivi5g02472	5	104977308	104984774	PCT