Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07098 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACTGATCAGCAATTGAGACCATGCAAATGTGGCTACCAGATTTGCGTTTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGACAACACAGAGGGAAGGTGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAGAAAGATGAAGAGCCAAAAAGCGAAGTCTAAATCATCTGAAGGACGGAAGCAGCTCAATGATGTGCGAGTTATTAGGAGGAATCTTGTTTATATAGTGGGGTTGCCTCTCGACCTGGCTGATGAAGATCTTCTCCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCGATGTCTCGGACAGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAGCACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAGTTCGATGTATTCAAAATGTGCATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACAACTAAATATTGCCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCGGATTGTGTATATCTTCATGAGATTGGCTCTCAAGAAGACAGCTTCACAAAAGATGAAATAGTATCAGCATACACTAGAAGTCATGTTCAACATATTACTGGTGCTGCAACAAATATGGAACGGCGGTCAGGGAATGTATTGCCTCCTCCGTTGGATGATTGCACGAGCAACACTTCAGATAAACCCGTTGTGAAAAATACTTCAAGTAACTCTGTTTGCACTGTAAGAGGTTCGCCTCCTATTGGTAGTCCTGCAAAGCCTATGGCTCCCCCTGCTGCATGGGGTTTGCGGGCTACAAATTGTCAGCCAGCTGCTGGCAATCTATCATGTCCTACTGGACTGTCCAAGCCCAAGTCTGATTCCATCAGCAGCACACTACCCTTTTCGTCTGCTGTTGCAAGCACCAATCAAGTTTCACTGCATAGTGAGTCAACAAAGAGGCAAGTGTCAAGTGATGGGCGACATAATATAGTGCCTGGAGAAAAAAGTAACACTATGAATGTCGTGGCGAGTGCAAGTGAAAAAACTCTGTTTTCTGATGTTTCTCTTGCACCTATGAATTCAAACACTCAGTTGTCTTCTATACCATTAGCCAGAGGTAGTTGTACAACATCAAACACAACAAAGTCTATTGACATCAAAGCAAATTCAAATGGCAGCTTTTGTCCCGACGAAGAAGTTGCTGCTACCAATCAAGAGATTCAAAATTTGTCATATGGGCTGTCCTCTGTTGACCTTGATAGAAATGCCAAAAATGAAAATTACAACGTAACCAAACCTAGCAGCCCGCCTCTTGATTATGTATCGGTTAAGTCTATGCAATCTCAAGGATCAGAACATACTGATAAATTCAGAAATGTGATAAATACAAATGCAGCTAATAAAGCCTCTATATCAGACAGCGAGATCTGTAAATCAAAAGAACAATATGATTTAAAATTGGATTCTCAATCTGAGCTAGCATCTGGTTATGTTGAAGTAGAAGATGATGTGACATCTTTTGATAGTCAGAGACTTAAGGATCCTGAAGTTGTTAGTCATTCTTATTTACCTAGGTCACGTTTTCCTCACGTTGCAAATCATAATAATCCTCATACTCTGCAGCATGGTGAACCTTGTACTGTTGTAAATGCTGGTTCTTTAGCCATAGATAATGAAGTTGGGTATGAACCAAAATTACATGGATCTGAAGCAGCATTATGCAATGGCTATTCTGAGAAATCGAACAGCACCAGCTCTTACAGGTTGCTTCATGATGAAAGCAATGATCATCACATTGGAAGATTAACGAGTAAAACAGTTAATATTAGAAATGATGCTGCTACAACAGATAATGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGAGTTTGATGCCTGGGATGATTTGGCGAAGCTGTTAAGAGACAGCACCGAAAATCAGAATCGTCCTCTAAAGAAATCTAGTTCTTGTAATGTTCAAACCAATCAATCAAGATTTTCTTTTGCAAGACAAGAGGAATCCAAAATCCAAGCCTTTGATATGAATCCATCTCATGGTGCCAACCAACAATTACTCAGAAGCCGCTCACTCATCCAAGATTTTATGGAAACCACAGACGTGTCTTTGGACAAGGTGGGTATTGCATATGGCTTTCCCGCCAATAACATTGAGGAATCTGAAAATCTAGGCAGTGGTCAGTTTGTTGCTTCTTCCAATAAGCTTTCTGCGCCCCCAGGATTTTCAGTTCCAAGCAGGCCACCACCTCCTGGTTTTTCTTCTCATGAGAGAATGGGGCAAACTTTTGACTCAATTTCTGGGAATTCATTGCTTGACCCTTTCTTACGGAGAAATTCGTATCAGACACCATCAACTGGAAATTTTGGTGGTGCAGGAGACATTGAGTTTATGGATCCGGCTATTTTGGCAGTTGGTAAGGGGAGGCTTCAAGGTGCGCTAAACAGCCCAACACTAGACATGCAATCCAATTACACCCCACAATTAAATTACCTTGAGAACGAAGCCCGACTTCAGTTATTGATGCAAAGATCTCTCTCACCACAACATAACCATCGATTTTCTGAAATTGGTAACACGTTTTCTCAGCTTGGTGATCCTTACGGAATTTCATCACGGATAGATCAATCACATGTCAGTAATCTGGCAACATTTCCTCAACTGTCTCTCCAGCAGTCTAGAAATGCTGTCTTGTCAAATGGCAATTGGGATGGGTGGAATGAAATGCAGAATGGAAATAGGATGGGTATGGCCGAGCTTTTGAGAAATGAAAGACCCGAGTTTAGTAAGTTTTATAGAGGATATGATGATTCAAAATACCAGATGCCAAATTCTGGGGATCTATACAACAGGACATTTGGGATTTGA 3003 0.4146 MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDNTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSEGRKQLNDVRVIRRNLVYIVGLPLDLADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNSTCSVYITYSKEEEAVRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEIVSAYTRSHVQHITGAATNMERRSGNVLPPPLDDCTSNTSDKPVVKNTSSNSVCTVRGSPPIGSPAKPMAPPAAWGLRATNCQPAAGNLSCPTGLSKPKSDSISSTLPFSSAVASTNQVSLHSESTKRQVSSDGRHNIVPGEKSNTMNVVASASEKTLFSDVSLAPMNSNTQLSSIPLARGSCTTSNTTKSIDIKANSNGSFCPDEEVAATNQEIQNLSYGLSSVDLDRNAKNENYNVTKPSSPPLDYVSVKSMQSQGSEHTDKFRNVINTNAANKASISDSEICKSKEQYDLKLDSQSELASGYVEVEDDVTSFDSQRLKDPEVVSHSYLPRSRFPHVANHNNPHTLQHGEPCTVVNAGSLAIDNEVGYEPKLHGSEAALCNGYSEKSNSTSSYRLLHDESNDHHIGRLTSKTVNIRNDAATTDNGESSIISNILSMEFDAWDDLAKLLRDSTENQNRPLKKSSSCNVQTNQSRFSFARQEESKIQAFDMNPSHGANQQLLRSRSLIQDFMETTDVSLDKVGIAYGFPANNIEESENLGSGQFVASSNKLSAPPGFSVPSRPPPPGFSSHERMGQTFDSISGNSLLDPFLRRNSYQTPSTGNFGGAGDIEFMDPAILAVGKGRLQGALNSPTLDMQSNYTPQLNYLENEARLQLLMQRSLSPQHNHRFSEIGNTFSQLGDPYGISSRIDQSHVSNLATFPQLSLQQSRNAVLSNGNWDGWNEMQNGNRMGMAELLRNERPEFSKFYRGYDDSKYQMPNSGDLYNRTFGI 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07098 1000 CDD RRM_CNOT4 105 204 IPR034261 -
Vivi2g07098 1000 SMART rrm2_1 111 192 IPR003954 GO:0003676
Vivi2g07098 1000 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Vivi2g07098 1000 MobiDBLite consensus disorder prediction 345 372 - -
Vivi2g07098 1000 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Vivi2g07098 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Vivi2g07098 1000 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Vivi2g07098 1000 Gene3D - 111 192 IPR012677 -
Vivi2g07098 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Vivi2g07098 1000 MobiDBLite consensus disorder prediction 261 288 - -
Vivi2g07098 1000 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Vivi2g07098 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Vivi2g07098 1000 SUPERFAMILY RING/U-box 3 66 - -
Vivi2g07098 1000 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 994 IPR039780 GO:0004842|GO:0030014
Vivi2g07098 1000 SMART rrm1_1 111 192 IPR000504 GO:0003723
Vivi2g07098 1000 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Vivi2g07098 1000 MobiDBLite consensus disorder prediction 252 301 - -
Vivi2g07098 1000 Pfam RING/Ubox like zinc-binding domain 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07098 Vivi-Chr2 213331248 213340697 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07098 K10643 - gmx:100796804 1364.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07098 2 213331248 213340697 Vivi2g07098 2 213331248 213340697 ECH
Vivi2g07098 2 213331248 213340697 Vivi5g02472 5 104977308 104984774 PCT
Vivi5g02473 5 104977310 104984774 Vivi2g07098 2 213331248 213340697 PCT