LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g02390	ATGTACAAGAACCAGCTTCAAGAGCTGGCACAAAGAAGCTGCTTCAACCTCCCTTCCTACACGTGCATTCGAGAAGGTCCCGATCACGCGCCGCGGTTTAAAGCCACCGTTAACTTTAACGGCGAGATCTTCGAGTGTCCGCAGTATTGTTCAACTCTCCGTCAAGCCGAACACTCCGCTGCTGAGGTGGCACTCGGTTCTCTCTCCCACCGTGGTCCCTCTCATTCTCTCGCTGCAAAAATCCTTGATGAGACGGGAGTGTACAAGAATCTGTTACAGGAAATTGCGCAAAGGGTTGGTGCGCCTTTGCCGCAATACACGACTTTCCGGTCAGGCTTAGGGCATCTACCTGTTTTTACGGGGACGGTAGAGTTAGCTGGGATTACGTTTACAGGTGAACATGCGAAGAATAAGAAACAAGCAGAGAAGAATGCAGCTATGGCTGCTTGGTCGTCTCTAAAGCAATTGGCGAAAGAAACTGCGAGCTCCTCAACTGAACCGGAGAACAACGATGAACTAGAACAAATCACCATAGCACGAGCCTTACTAAACTACCGTCTGAAGGAAAAGATGGCAATGTCCAATCCAAATGCTCTGATTCCATTTCCAAAGAAGTTCCAGTTTCAAAATCCCAGACCGACCAGTCCTCAACCTCGACCGGCGACATCGAAGATACTTCCCCTAATTTGCCCAAAGACATCACCTCGTAACAGGCATCCTGCAATGGCATCGTCCAGCAGCGATCATAATTCCAATATGTCACCACTTTCTTCTGCACCAGAAAACAGATGGATGCGACGCCCAAAATTCCCTGCAGCAGGAGCAGCACCATATGTTCCGATTCGACATATGCGATCACCTTGCCAGGGAATTGCACCTCCAGTTACCATAAGGACTGCAATACCTGTATTCTCCCCGCCACCAGCCGCAGTGTCTCCTCAAGTAATGCAGCCTCATCCTGTGCGAGTTGCTCCTCCGATCAACATTCGACAAGTAGTTCCAGCATATGCCGCTCCACAAGTTCGCAAAGATGAACATGTTCCCATCAGCAAAGACAATCTGGCACGAACACCATGTGCCACTACACCAGTTCGAGTAGACAAAACTGTTCCTAGCGTCAAAGTTGATCCAGCACCAGCATCAGCACCAGCAGAAAATGCTACTCCACCAGTTCAAGTAGACGAACCTCTTCCTATCAGCAAAGTCGATCCTGCTCCCCTACTCTATGCAGATGAATCTATTCCCATCAGCAAAGATGTTTCAGCACCAGCAGTTCAAGTAGACGAACCTCTTCTCATCAGCAAAGATGATCCAGCACCAACTGGTAGCACAGATAAAACCGACACCAAAACTGAGAATATTCCAGCAGAATCTGAGGCAGTGCAGAGATTGGAGCAGCTGAAAATTTGA	1410	0.4879	MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSAAEVALGSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEHAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNALIPFPKKFQFQNPRPTSPQPRPATSKILPLICPKTSPRNRHPAMASSSSDHNSNMSPLSSAPENRWMRRPKFPAAGAAPYVPIRHMRSPCQGIAPPVTIRTAIPVFSPPPAAVSPQVMQPHPVRVAPPINIRQVVPAYAAPQVRKDEHVPISKDNLARTPCATTPVRVDKTVPSVKVDPAPASAPAENATPPVQVDEPLPISKVDPAPLLYADESIPISKDVSAPAVQVDEPLLISKDDPAPTGSTDKTDTKTENIPAESEAVQRLEQLKI	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g02390	469	FunFam	Double-stranded RNA-binding protein 2	84	155	-	-
	Vivi5g02390	469	MobiDBLite	consensus disorder prediction	238	259	-	-
	Vivi5g02390	469	FunFam	Double-stranded RNA-binding protein 2	1	70	-	-
	Vivi5g02390	469	CDD	DSRM_AtDRB-like_rpt1	1	69	IPR044450	GO:0003725
	Vivi5g02390	469	SMART	DRBM_3	2	69	IPR014720	-
	Vivi5g02390	469	SMART	DRBM_3	88	154	IPR014720	-
	Vivi5g02390	469	Gene3D	-	2	83	-	-
	Vivi5g02390	469	Pfam	Double-stranded RNA binding motif	2	65	IPR014720	-
	Vivi5g02390	469	Pfam	Double-stranded RNA binding motif	88	153	IPR014720	-
	Vivi5g02390	469	SUPERFAMILY	dsRNA-binding domain-like	2	68	-	-
	Vivi5g02390	469	SUPERFAMILY	dsRNA-binding domain-like	88	159	-	-
	Vivi5g02390	469	Gene3D	-	84	155	-	-
	Vivi5g02390	469	MobiDBLite	consensus disorder prediction	427	469	-	-
	Vivi5g02390	469	PANTHER	-	1	340	-	-
	Vivi5g02390	469	MobiDBLite	consensus disorder prediction	232	263	-	-
	Vivi5g02390	469	MobiDBLite	consensus disorder prediction	374	398	-	-
	Vivi5g02390	469	CDD	DSRM_AtDRB-like_rpt2	86	154	IPR044451	GO:0003725
	Vivi5g02390	469	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	87	155	IPR014720	-
	Vivi5g02390	469	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	1	70	IPR014720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g02390	Vivi-Chr5	101670673	101674185	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g02390	-		-	gmx:100816445	551.592

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi2g07170	2	214702296	214707187	Vivi5g02390	5	101670673	101674185	PCT