Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07170 ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGGAGCTGCTTCAATCTTCCTTCGTACACTTGTATCCGAGAAGGTCCCGATCACGCGCCGAGGTTTAAAGCTACCGTTAACTTTAACGGCGAGATCTTCGAGAGTCCTCAGTACTGTTCGACTCTCCGTCAAGCTGAACATTCCGCTGCCGAAGTAGCGCTCAATTCGCTCTCGCACCGTGGTCCTTCGCACTCACTCGCCGCTAAGATCCTCGATGAGACTGGAGTTTACAAGAATCTCTTACAGGAAATTGCACAGCGAGTAGGGGCTCCATTGCCTCAGTACACAACATTCAGATCAGGCCTAGGACATTTACCTGTTTTTACTGGAATAGTAGAATTAGCTGGAATCACATTTACCGGTGAACCTGCCAAGAATAAGAAACAAGCCGAGAAAAATGCAGCCATGGCAGCTTGGTCATCTTTAAAGCAATTGGCAAAAGAGAGTGCTAGCTCTTCAACTGAACCTGAGAACAATGACGAATTAGAACAGATCACTATAGCTCGGGCTTTGCTGAACTACCGTCTGAAGGAAAAGATGTCGATGTCTAACCGAAATGCGCCTATTCCATTTCAGAAGAAGTTTCAGATTCAAAATCTCAGGCCAGCTAGTTCTCAACCTCCTGCCACCACATCAAAGATCCTTCCCCTAATTTGCCCAAAGACAGGACCTCGAAACAAACCTTCATCGGCAACATCAAATGAAAATCCTCGAAGCAGGCATCCGCTAACAACAGCAACCAGTGACAAGTCGATTGTGCAGCCGCCACAATCTTATGCACAAGAAAACTGGATGACCCGTCCTCTGAGGTTCCCTGCAGCAGGGGCAGCACCTTATGTTCCCATCCGACAAATGAGATCACCTTGCCATGGGATTGCACCTCCAGTGGCTATGAGGACGGTAGTACCCGTATTCTCTGCACCACCTCTTCCACCACCTGCCTCAGTTCATCAGGTTATACGGGCTCCCCCTGTACGAGTTGCTCCTCCAGTAAGTATTCGGCAAGCTATTCCTGTATTTGCTGCCCCTCCACCAAGAAAAGATGAATCTCCCCCCATTCAAAATAATCTACCTGCTCCTGCTGAACAAGATAAGCTTCCAGCTAAAATTCTAGAGACGGAGAAGACTGAGAAGTGCCCACCACAACCAGAGACTTTGCAGAGTTTGGAGCAGCTAAAAATTTGA 1218 0.4803 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSTEPENNDELEQITIARALLNYRLKEKMSMSNRNAPIPFQKKFQIQNLRPASSQPPATTSKILPLICPKTGPRNKPSSATSNENPRSRHPLTTATSDKSIVQPPQSYAQENWMTRPLRFPAAGAAPYVPIRQMRSPCHGIAPPVAMRTVVPVFSAPPLPPPASVHQVIRAPPVRVAPPVSIRQAIPVFAAPPPRKDESPPIQNNLPAPAEQDKLPAKILETEKTEKCPPQPETLQSLEQLKI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07170 405 PANTHER - 1 355 - -
Vivi2g07170 405 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Vivi2g07170 405 MobiDBLite consensus disorder prediction 391 405 - -
Vivi2g07170 405 Gene3D - 84 155 - -
Vivi2g07170 405 MobiDBLite consensus disorder prediction 236 261 - -
Vivi2g07170 405 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Vivi2g07170 405 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Vivi2g07170 405 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Vivi2g07170 405 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Vivi2g07170 405 MobiDBLite consensus disorder prediction 352 405 - -
Vivi2g07170 405 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Vivi2g07170 405 SMART DRBM_3 2 69 IPR014720 -
Vivi2g07170 405 SMART DRBM_3 88 154 IPR014720 -
Vivi2g07170 405 MobiDBLite consensus disorder prediction 211 261 - -
Vivi2g07170 405 SUPERFAMILY dsRNA-binding domain-like 88 157 - -
Vivi2g07170 405 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Vivi2g07170 405 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Vivi2g07170 405 Gene3D - 2 83 - -
Vivi2g07170 405 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07170 Vivi-Chr2 214702296 214707187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07170 - - cam:101510954 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07170 2 214702296 214707187 Vivi2g07170 2 214702296 214707187 ECH
Vivi2g07170 2 214702296 214707187 Vivi5g02390 5 101670673 101674185 PCT