Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02165 ATGGCTCAAGTCCTACACTCTCCAACACCATCCTCCCATTTCTCTTCATCAACCACTCCTCCAGCTTCTTCTGATGACACCATTCTCATTCTCTCTACCGACCAAGAACAACACCAACCACCATCACTCTCTTCTTCTTCATCTTCTTCTTCTTTTTCTTCTTTAGCCGTGGCAGTTAACAACAGTTTTTCTGCAGTAACAGAATGTGAAGCAGAGGGGAAAAAGACACAGCAAGAGCTATCCCTTTTGGCCATTCTTGTGACCCTTTTGAGGAAATCCTTAGTTTCTTGCTCTACTGATTCTGCTGCCATGGAAATCGCTGCTGCTATGGATATCGGTCACCCGACTAACGTGCGCCACGTTGCGCATGTTACTTTCGATAGGTTCAATGGTTTCTTGGGTTTGCCTCGAGAGTTTGAACCTCAACTCCCCACTATACCTCCTAGTGCCAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGAAACTATCATATGACACAAGAGGGAACATTGTGCCAACGATTCTACTACTAATGCAAAGACACTTGTATGCTCAAGGAGGATTACAGGCAGAGGGAATTTTCAGAATTAACGCGGATAATAATCGAGAGGACTATGTTAGGGAACAATTGAGTAAGGGAGTGGTTCCTCAAGACATTGATGTACATTGTTTAGCAGGATTGATTAAGGCTTGGTTTAGGGAGCTGCCAAGAGGTATTCTGGATTCTTTATCTCCAGAGCAGGTGATGCAATGCCAAACAGAAGAGGATTGTGCAGAACTCGCGAAACAGTTACCTCATACTGAAGCTTCGCTTTTGGAATGGACTATCAATCTGATGGCTGATGTTGTTCAAGAGGAACGTCTTAATAAGATGAACGCGCGCAACATTGCTATGGTTTTCGCACCAAACATGACTCGTATGGTAGATCCTTTGACTGCACTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTTGTATCAAGCACACTAAAGGCAAGGAAGGAGGGATTCTGA 1026 0.4386 MAQVLHSPTPSSHFSSSTTPPASSDDTILILSTDQEQHQPPSLSSSSSSSSFSSLAVAVNNSFSAVTECEAEGKKTQQELSLLAILVTLLRKSLVSCSTDSAAMEIAAAMDIGHPTNVRHVAHVTFDRFNGFLGLPREFEPQLPTIPPSASATVFGVSTESMKLSYDTRGNIVPTILLLMQRHLYAQGGLQAEGIFRINADNNREDYVREQLSKGVVPQDIDVHCLAGLIKAWFRELPRGILDSLSPEQVMQCQTEEDCAELAKQLPHTEASLLEWTINLMADVVQEERLNKMNARNIAMVFAPNMTRMVDPLTALMYAVQVMNFLKTLVSSTLKARKEGF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02165 341 CDD CRIB 110 153 - -
Vivi5g02165 341 ProSiteProfiles CRIB domain profile. 112 125 IPR000095 -
Vivi5g02165 341 MobiDBLite consensus disorder prediction 1 49 - -
Vivi5g02165 341 ProSiteProfiles Rho GTPase-activating proteins domain profile. 157 341 IPR000198 GO:0007165
Vivi5g02165 341 Pfam P21-Rho-binding domain 111 139 IPR000095 -
Vivi5g02165 341 Pfam RhoGAP domain 174 308 IPR000198 GO:0007165
Vivi5g02165 341 PANTHER MKIAA1688 PROTEIN 1 339 IPR044785 GO:0005096
Vivi5g02165 341 CDD RhoGAP 174 331 - -
Vivi5g02165 341 SMART PBD_5 112 146 IPR000095 -
Vivi5g02165 341 SMART RhoGAP_3 171 334 IPR000198 GO:0007165
Vivi5g02165 341 SUPERFAMILY GTPase activation domain, GAP 152 331 IPR008936 -
Vivi5g02165 341 Gene3D CRIB domain 107 145 IPR036936 -
Vivi5g02165 341 Gene3D Rho GTPase activation protein 146 339 IPR008936 -
Vivi5g02165 341 FunFam Rho GTPase-activating protein 5 142 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02165 Vivi-Chr5 89946875 89948321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02165 - K20642 gmx:100784019 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02165 5 89946875 89948321 Vivi5g02165 5 89946875 89948321 ECH
Vivi2g06349 2 198677444 198679793 Vivi5g02165 5 89946875 89948321 PCT