Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02037 ATGAAAATGGCCATGGATTGCGGCATCTATGGCGTCATCAAGCTCCGCATGTTCTTCTTCACTTTCCTCATTCTCTTTCTCTCCACCTTCACCTCCACCCTCTCCGTCTCGTCATCTTCAACGGTTCAGATAAACTCAAACTCAATCTTGGTGGCTCTACTCGACTCACATTACACCGAACTCGCTGAACTCGTTGAAAAAGCCATGCTTCTTCAAACTCTAGAAGACACTGTCGGCAACAACAACATCACCATTTTCGCTCCCAAAAACGAAGCTCTCGAACGAGATCTCGACCCTAACTTCAAAACCTTCCTCCTCGAACCACGAAATCTCAAGTCTCTTCAAACTCTCCTCATGTCACACATCATTCCAACCCGAATCAACGGATCCATCCCCGGGTCGACCCGACACACAACACTCTCCCTTCAACACCACCTCACTATCCAACCAAACCAAACCTCCCAACAATGGACAGTTAACGGCGCGAGAATTCTCCATCTAAACGCCGTGACTAGACCCGACGGCGTCATCCACGGAATCGAACGTCTCATTATCCCACGCTCCGTACAAGACGACTTCAACCGTCGCAGAAGTCTCGTCTCCATCGCCGCTATTAAACCGGAAGGAGCACCGGAAGTTGATCCGAGAACTCACCGCTTGAAAAAACCAGCCCCGCCGCAAAACCCTGGCTCACCGCCGGCTCTTCCAATTTACGACGCATTGGCTCCCGGACCGTCACTAGCACCGGCGCCAGCACCAGGACCTGGTGGACCCCACCACCATTTCAACGGCGAGGCACAGGTGAAAGATTTCATCCAAACGCTGATTCATTACGGCGGTTACAACGAGATGGCGGATATTCTCGTAAACCTAACGTCGTTAGCGACGGAGATGAGTCGGTTAGTTTCAGAGGGTTATGTTTTAACGGTTCTAGCTCCGAATGACGAAGCTATGGCTAAGTTAACAACGGACCAGTTGAGTGAACCGGGTTCACCCGAACAAATCATGTATTATCATTTAATTCCTGAGTATCAGACTGAAGAGAGTATGTATAATGCTGTTAGAAGATTCGGGAAGGTTCGTTATGATACACTTCGATTGCCTCATAAGGTTGATGCTCAGGAAGCGGATGGGTCGGTGAAATTCGGGCACGGTGACGGGTCGGCGTATTTGTTCGACCCGGATATTTATACTGATGGGAGGATTTCTGTGCAAGGGATTGATGGGGTTTTGTTTCCTCATCAAGAGGAAGAGGAGGTTGTTGATAAGGATGTGGCCCGAACCCGGTTGGGTCAACCCGCTAAAGTTGTGGTTAAGCAAAGAAGAGGAAAATTGCTTGAAACAGCTTGCTGGATGCTTGGAACCTTTGGACAACATTCTAGGTTCACCTCTTGTCAATAA 1401 0.4918 MKMAMDCGIYGVIKLRMFFFTFLILFLSTFTSTLSVSSSSTVQINSNSILVALLDSHYTELAELVEKAMLLQTLEDTVGNNNITIFAPKNEALERDLDPNFKTFLLEPRNLKSLQTLLMSHIIPTRINGSIPGSTRHTTLSLQHHLTIQPNQTSQQWTVNGARILHLNAVTRPDGVIHGIERLIIPRSVQDDFNRRRSLVSIAAIKPEGAPEVDPRTHRLKKPAPPQNPGSPPALPIYDALAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLIHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVDAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPHQEEEEVVDKDVARTRLGQPAKVVVKQRRGKLLETACWMLGTFGQHSRFTSCQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02037 466 ProSiteProfiles FAS1/BIgH3 domain profile. 268 411 IPR000782 -
Vivi5g02037 466 ProSiteProfiles FAS1/BIgH3 domain profile. 45 184 IPR000782 -
Vivi5g02037 466 Pfam Fasciclin domain 57 186 IPR000782 -
Vivi5g02037 466 Pfam Fasciclin domain 291 413 IPR000782 -
Vivi5g02037 466 MobiDBLite consensus disorder prediction 208 261 - -
Vivi5g02037 466 Gene3D FAS1 domain 261 414 IPR036378 -
Vivi5g02037 466 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 6 463 IPR044654 -
Vivi5g02037 466 FunFam Fasciclin-like arabinogalactan protein 16 263 414 - -
Vivi5g02037 466 SUPERFAMILY FAS1 domain 44 187 IPR036378 -
Vivi5g02037 466 SUPERFAMILY FAS1 domain 247 413 IPR036378 -
Vivi5g02037 466 Gene3D FAS1 domain 31 186 IPR036378 -
Vivi5g02037 466 MobiDBLite consensus disorder prediction 225 239 - -
Vivi5g02037 466 SMART fasc_3 309 414 IPR000782 -
Vivi5g02037 466 SMART fasc_3 84 187 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02037 Vivi-Chr5 82339904 82343303 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02037 - - adu:107477699 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06227 2 196824042 196827224 Vivi5g02037 5 82339904 82343303 PCT