Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06227 ATGTATTTCCATTGCCGCATCCAGGGCGTTCTTCTTCTTGTTCTTCTCTTTATCTCAATTCTCTTATCTTCTTCTTCTTCATCACCAACGAGTCAAATCAACTCCAACTCAGTCCTAGTAGCACTTCTCGACTCACATTACACTGAACTCGCCGAACTCATTGAAAAAGCTATGTTATTACAAACTCTAGAAAACACCGTCGCAACCCATAATATCACAATCTTCGCTCCAAACAATGAAGCTCTTGAACGTAATCTTGACTCAGATTTCAAACAGTTTCTTCTCGAACCGGGTAATATCCATTCCCTCCAAACTCTCTTACTGTTCCACGTCATCCCAACCCGAATCGTAACCGGGTCGACCCGAGACCAACACAAGACCCTCTCCAATCACAATCTCCACCTCGCCGCCAATATCACCACCGGCGAATGGACCGTCGACCAAACCCAAATCACCCACCCGAATTTCATAACCCGACCCGACGGTATCATCCACGGGATCCAGCGTCTTCTCATCCCACGCTCCGTGGAAAACGACTTCAACAACCGCCGTAGTCTCCGTTCCATCACCGCCGTAAAACCGGAAGGTTCACCAGAAATCGACACGAGAAATCACCGATTGAAGAACAAATCTCCACCACCGGAAAAACCAGGTTCACCACCGACACTTTCGATCTACGAAGCAATAGCTCCTGGTCCGTCGCTGGCCCCGGCGCCAGCGCCGGGACCAGGCGGCCCACACCACCACTTCAACGGCGAGGCGCAGGTGAAGGATTTCATCAAAACGTTACTCCATTACGGTGGTTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCGTTAGCAACGGAAATGAGTCGTTTAGTTTCGGAGGGTTACGTGTTAACGGTTTTGGCTCCGAACGATGAAGCAATGGCGAAGTTAACGACGGAGCAGTTGAGTGAACCGGGTTCACCGGAAGAGATAATGTATTACCATATTATCCCGGAGTATCAAACGGAAGAGAGTATGTATAATGCTGTTAGAAGATTTGGGAAAGTTCGGTACGATACGTTGCGGTTGCCGCATAAGGTTATGGCTGAGGAAGCTGATGGGTCTGTTAAATTTGGACACGGTGGCGTGGCGGGTTATTTGTTTGACCCGGATATTTATACCGACGGGAGAATCTCTGTGCAGGGGATTGATGGGGTTTTGTTTCCTATGGAGGAGAAGGAGGAGGTTGTGGAGCAGGTTAAACCCGTTTCAAAGATGGGTCAACCCGGTAAAGTTGATGTCAAACACAGAAGAGGCAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAACATTCTAGATTCGCCTCTTGTCTTCAATGA 1368 0.4825 MYFHCRIQGVLLLVLLFISILLSSSSSSPTSQINSNSVLVALLDSHYTELAELIEKAMLLQTLENTVATHNITIFAPNNEALERNLDSDFKQFLLEPGNIHSLQTLLLFHVIPTRIVTGSTRDQHKTLSNHNLHLAANITTGEWTVDQTQITHPNFITRPDGIIHGIQRLLIPRSVENDFNNRRSLRSITAVKPEGSPEIDTRNHRLKNKSPPPEKPGSPPTLSIYEAIAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIKTLLHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGSPEEIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVMAEEADGSVKFGHGGVAGYLFDPDIYTDGRISVQGIDGVLFPMEEKEEVVEQVKPVSKMGQPGKVDVKHRRGKLLETACWMLGTFGQHSRFASCLQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06227 455 ProSiteProfiles FAS1/BIgH3 domain profile. 256 399 IPR000782 -
Vivi2g06227 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 23 446 IPR044654 -
Vivi2g06227 455 FunFam Fasciclin-like arabinogalactan protein 16 251 402 - -
Vivi2g06227 455 MobiDBLite consensus disorder prediction 190 247 - -
Vivi2g06227 455 MobiDBLite consensus disorder prediction 198 212 - -
Vivi2g06227 455 SMART fasc_3 297 402 IPR000782 -
Vivi2g06227 455 SMART fasc_3 73 174 IPR000782 -
Vivi2g06227 455 SUPERFAMILY FAS1 domain 36 174 IPR036378 -
Vivi2g06227 455 SUPERFAMILY FAS1 domain 235 402 IPR036378 -
Vivi2g06227 455 ProSiteProfiles FAS1/BIgH3 domain profile. 34 171 IPR000782 -
Vivi2g06227 455 Pfam Fasciclin domain 46 173 IPR000782 -
Vivi2g06227 455 Pfam Fasciclin domain 279 355 IPR000782 -
Vivi2g06227 455 Gene3D FAS1 domain 38 174 IPR036378 -
Vivi2g06227 455 Gene3D FAS1 domain 273 401 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06227 Vivi-Chr2 196824042 196827224 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06227 - - gmx:100782264 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06227 2 196824042 196827224 Vivi5g02037 5 82339904 82343303 PCT