Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01506 ATGCTTGGCTGTATACTGAGATGCTTGCAGCCGAAACAATTGTTCATCAAAAGGATAATCTCATTCTTGGCATATTCTCCGGAACAACATCCCATTGTGCTTCAAATTGGAGGGAGCAATGTAGAAAGTCTGGCAAAAGCAACTGAACTTGCTAATGCTTATTGCTATGATGAGATCAATTTAAACTGTGGTTGCCCAAGTCCAAGAGTAGCTGGACATGGGAGTTTTGGTGTGCGTCTTATGCTTGACCCAAAGTTTGTTGCCGAGGCTATGTCAGCAATTGCTTCAAGTACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTACGATGAACTGTGTGATTTCATATTCAAGGTTTCTTCTTTATCACCCACTAAACATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCAGCTGAAAATAGGAGTATTCCTCCGCTAAAATATGAATACTTTTATGGCCTTTTACGAGACTTTCCAGATTTAACATTCACAATAAACGGGGGTATTACTAGTGTTGATGAGGTCACAGCAGCTCGAGAAGCTGGGGCTCACGGCGTTATGATTGGACGTGCAGCATTCTATAACCCTTGGAATGTATTGGGACATGTTGATACTGCAATTTACGGTGCACCAAGTTGTGGTCTTACACGTCGTCAGGTTCTTGAAAAATATATAGTCTATGGGGACTCAGTGTTGGGAAAATATGGACATAAGCCAAATGTACGAGACGTTGTGAAGCCTTTACTCAATCTTTTCCATTCAGAACCTGGGAATGGACAGTGGAAGCGCAACGCCGATGCCGCTTTTCGAAATTGCACGACAATAGAATCATTTTTTGAAGAAACCCTTGAAGCAATTCCTGACTCGGTATTGGATTCGCCTGTTTCAGAACCATCTCCTGGCCGCACCGATCTTTTTGCTAATGTAGACAGTTTACTGCCTCCTCCATACAAAACAAGAGAAGAGGCCATTGTTATATGCGCATAG 1023 0.4233 MLGCILRCLQPKQLFIKRIISFLAYSPEQHPIVLQIGGSNVESLAKATELANAYCYDEINLNCGCPSPRVAGHGSFGVRLMLDPKFVAEAMSAIASSTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVTAAREAGAHGVMIGRAAFYNPWNVLGHVDTAIYGAPSCGLTRRQVLEKYIVYGDSVLGKYGHKPNVRDVVKPLLNLFHSEPGNGQWKRNADAAFRNCTTIESFFEETLEAIPDSVLDSPVSEPSPGRTDLFANVDSLLPPPYKTREEAIVICA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01506 340 Pfam Dihydrouridine synthase (Dus) 25 286 IPR035587 -
Vivi5g01506 340 Gene3D Aldolase class I 5 214 IPR013785 -
Vivi5g01506 340 PIRSF Dus 15 310 IPR001269 GO:0008033|GO:0017150|GO:0050660
Vivi5g01506 340 Gene3D - 226 290 - -
Vivi5g01506 340 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 21 334 IPR004653 GO:0002943|GO:0017150
Vivi5g01506 340 SUPERFAMILY FMN-linked oxidoreductases 22 276 - -
Vivi5g01506 340 CDD DUS_like_FMN 17 209 IPR035587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01506 Vivi-Chr5 46701615 46705465 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01506 K05539 - gmx:100779457 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01506 5 46701615 46705465 Vivi5g01506 5 46701615 46705465 ECH
Vivi5g01506 5 46701615 46705465 Vivi3g06694 3 188886322 188894415 PCT