Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00435 ATGATGGATTCTTCTTCCTCTCCTCTCTCTCTTCAAACCCCTTTAACACAATCCTCTCCAAAACCCACCAAAAAAACCTTACTTTCATCTCTAATCGGCACCAACACCCCTTCATCTCTCACAACACCTTCCTTTCAAGAAGACAACTACTTCATCAACCTCCTCAAATCCTCAGAGAAAAAAGCACTTCAAGACCTCAAAAAACACCTCCTTGAATCCTCTTCCTCATCCAATGAACTTACCATGTGGGATGTTCCTCTTCTTGGTGGTGACGACAGAGCTGATGTAATCCTCTTGAAGTTCCTCAGAGCAAGAGACTTCAGAGTCAATGAATCCCTCAACATGATCCTAAAGTGCTTGTCTTGGAGAAAAGAGTTCAAAGCTGACACCATAGTGGAAGAGGATTTAAGTCAGTTCAAGGAGCTAGAAGGTGTTATAGCTTATATGCAAGGCTATGATAAAGAGGGTCACCCTGTTTGTTACAATGCTTATGGTTTGTTTAGAGATAAGGACATGTATGAGAGGTTCTTTGGTGATGAAGAGAAGCTCAAGAAGTTTCTTAGGTGGAGAGTTCAAGTTCTTGAAAGAGGGATTAGGCTTTTGCATTTTAAGCCAGGTGGTGTTAATTCTCTTATTCAAGTAACCGATCTTAAAGATATGCCTAAAAGAGAGTTGAGGGTTGCTTCTAATCATATTATGTCACTTTTTCAAGATAATTACCCTGAAATGGTTGCTAGAAAGATCTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTTAGTCCTTTTTTGACTCAAAGGACTAAAAGCAAGTTTGTGATCTCAAAAGAAGGAAGTGCTGCTGAGACACTCTACAAATTCATTAGACCTGAGGATATTCCTGTTCAATATGGAGGGCTGAGTTTTCCCAGTGATTTGCAAAATGGTCCCCCAAAACCTGCTTCTGAATTCACTGTCAAAGGAGGAGAGAAAGTGAATATACAAATAGAAGGAATTGAGGGAGGTGCAACTATCACTTGGGACATTGTTGTTGGAGGCTGGGACTTAGAATACAGTGCTGAGTTTGTTCCAAATGCTGAAGGAAGCTACACTATAGCTGTTGAGAAACCAAGAAAGATTGGAGCCTCAGAAGAAGCAATCCACAACTCATTCACATCGAAAGAGTCCGGCAAAATGATACTATCGGTCGATAACACTGCCTCTAGGAAGAAAAAGGTCGCCGCGTATCGTTACGTCGTCCGAAAATGCACCGCAACTTGA 1269 0.4113 MMDSSSSPLSLQTPLTQSSPKPTKKTLLSSLIGTNTPSSLTTPSFQEDNYFINLLKSSEKKALQDLKKHLLESSSSSNELTMWDVPLLGGDDRADVILLKFLRARDFRVNESLNMILKCLSWRKEFKADTIVEEDLSQFKELEGVIAYMQGYDKEGHPVCYNAYGLFRDKDMYERFFGDEEKLKKFLRWRVQVLERGIRLLHFKPGGVNSLIQVTDLKDMPKRELRVASNHIMSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGSAAETLYKFIRPEDIPVQYGGLSFPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKIGASEEAIHNSFTSKESGKMILSVDNTASRKKKVAAYRYVVRKCTAT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00435 422 FunFam SEC14 cytosolic factor family protein 143 318 - -
Vivi5g00435 422 SUPERFAMILY CRAL/TRIO N-terminal domain 51 135 IPR036273 -
Vivi5g00435 422 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 133 308 IPR001251 -
Vivi5g00435 422 SMART sec14_4 141 305 IPR001251 -
Vivi5g00435 422 Pfam CRAL/TRIO, N-terminal domain 62 117 IPR011074 -
Vivi5g00435 422 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g00435 422 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 319 416 IPR036598 -
Vivi5g00435 422 Gene3D - 127 313 IPR036865 -
Vivi5g00435 422 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Vivi5g00435 422 CDD SEC14 136 303 IPR001251 -
Vivi5g00435 422 ProSiteProfiles GOLD domain profile. 284 418 IPR009038 -
Vivi5g00435 422 Gene3D GOLD domain 314 416 - -
Vivi5g00435 422 SUPERFAMILY CRAL/TRIO domain 141 303 IPR036865 -
Vivi5g00435 422 Gene3D - 53 125 - -
Vivi5g00435 422 PANTHER PATELLIN-1 35 418 IPR044834 GO:0008289
Vivi5g00435 422 Pfam CRAL/TRIO domain 143 302 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00435 Vivi-Chr5 6474033 6477062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00435 98 297 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 1.88e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00435 - - gmx:100809944 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02303 6 101925252 101927419 Vivi5g00435 5 6474033 6477062 PCT