Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00343 ATGGAGCTTATTTCGGGTCTACCCGAAGATGTAGCCCGAGACTGTCTAATTCGGGTTTCATACCAACAGTTTCCGGCGGTGGCGGCGGTTTGTAAAGGGTGGAAGACGGAGATACATGCACCGGAGTATCACCGGGAACGGCGGAGAACAGGACATGCTCAGAAGGTTTTAGTTATGGTTCAAGCACGCGTTGAACCGGAGATAACTAAAACCGGTTCGGGTAAAAGACTTACGAACCCGGTTTACCGGTTGAGTGTATTTGAACCGGAAAGTTGTAGTTGGAGTGAGTTACCGGCACCACCCGGTTATAGTTCAGGGTTACCGGTGATGTGTCAGTTAGCATGTGTTGGTTATGATCTTGTCGTGTTGGGTGGGTTAGATCCGGAAACATGGAAAGCATCGAATGATGTTTTTGTTTATAATTTCCTGTCGGCGAAGTGGCGTTGTGGGACCCACATGCCAGGTGGAGCTAGAACGTTTTTCGGTTGTTCGTCGGATGGTCGCCGGAATGTTTTTGTCGCCGGTGGTCATGATGATGAGAAGAACGCGCTGAGGTCGGCGTTGGTTTATGATGTTGTGGAGGATGAGTGGGTTGAGCTGCCGGAGATGTCGTCGGAGCGTGATGAGTGTAAGGCGGTGTTCCGGCGAGGGAGGTTTGTTGTCGTCGGTGGTTACAAAACGGAGAATCAAGGGAGATTTGAAAGAAGCGCGGAGGCGTTTGATTTTGTGACGTGGAAGTGGGGTCAGGTTGAGGAGGAGTTCTTGGATTGTGCCACGTGTCCTATGACTTTGGTGGACGGTGGAGATGGTGGTGAGAGTGTTTATATGTGTTGCGGAGGGGAATTGGTTGCGATGAGGAATCACACGTGGCAGAAGATGGGGAGGGTTCCGGATGAGATTCGCAACGTGGCGTATGTTGGAGCGTTCGATGGGGTTGTGGTTGTGATTGGATCAAGTGGATATGGGGAGGTGCATATGGGGTATGTTTTTGATGTGAGGAGGTGTAATTGGAGAAAATTGGATTGTCCAGATGGGTTTAAGGGTCATGTCCAAACCGGTTGTGTTTTAGAAATTTAG 1077 0.5005 MELISGLPEDVARDCLIRVSYQQFPAVAAVCKGWKTEIHAPEYHRERRRTGHAQKVLVMVQARVEPEITKTGSGKRLTNPVYRLSVFEPESCSWSELPAPPGYSSGLPVMCQLACVGYDLVVLGGLDPETWKASNDVFVYNFLSAKWRCGTHMPGGARTFFGCSSDGRRNVFVAGGHDDEKNALRSALVYDVVEDEWVELPEMSSERDECKAVFRRGRFVVVGGYKTENQGRFERSAEAFDFVTWKWGQVEEEFLDCATCPMTLVDGGDGGESVYMCCGGELVAMRNHTWQKMGRVPDEIRNVAYVGAFDGVVVVIGSSGYGEVHMGYVFDVRRCNWRKLDCPDGFKGHVQTGCVLEI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00343 358 Gene3D - 68 344 IPR015915 GO:0005515
Vivi5g00343 358 PANTHER OS02G0208700 PROTEIN 2 358 IPR044595 GO:0080037|GO:2000762
Vivi5g00343 358 Pfam F-box domain 4 36 IPR001810 GO:0005515
Vivi5g00343 358 Pfam Kelch motif 113 154 IPR006652 GO:0005515
Vivi5g00343 358 Pfam Kelch motif 171 204 IPR006652 GO:0005515
Vivi5g00343 358 CDD F-box_AtAFR-like 3 47 - -
Vivi5g00343 358 SMART kelc_smart 170 217 IPR006652 GO:0005515
Vivi5g00343 358 SMART kelc_smart 119 167 IPR006652 GO:0005515
Vivi5g00343 358 SUPERFAMILY Kelch motif 78 340 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00343 Vivi-Chr5 4613635 4615700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00343 - - gmx:100796602 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00343 5 4613635 4615700 Vivi5g00343 5 4613635 4615700 ECH
Vivi2g07850 2 227261634 227263129 Vivi5g00343 5 4613635 4615700 PCT