Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00339 ATGAAGGGTTTAACATTAAACTGCATGGATCGCAAGTCTGAAGCATATGAACTTGTTCGTCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTATACCGGTCAGACAGAGAATACAGGGAGGCAATCAAGTGCTACCGAAATGCACTTAGAATAGATCCTGACAATATTGAAATTCTGCGTGATTTGTCACTCTTACAGGCTCAAATGAGAGATTTATCTGGCTTTGTTGAGACTAGACAACAACTTTTGACTCTTAAGCCAAATCATCGCTTGAACTGGATTGGCTTTTCTGTTGCCCATCATTTAAACTCTAATGCGTCCAAGGCTGTGGAAATTTTGGAAGCCTATGAAGGGACTTTAGAAAATGATTATCCTCCAGATAATGAACGGGGCGAGCATGGGGAAATGATTTTATATAAGATCTCTTTGCTAGAGGAATGCGGATTTCTTGATAAAGCTCTTGAAGAGTTACGCCAAAGCGAATCGAAAATTGTTGATAAACTTGCTTTTAAAGAACAAGAGGTTTCACTTGTAGTGAAGCTTGGTCATTTAGAAGAAGCAGAATCGTTGTACAGGATATTACTTTCCATGAATCCTGATGATTATAGTTACTATGAGGGTCTCCAAAAGTGTGTTGGTTTGTATTTAGAAGATGGGAAGTACTCTGCCGATCAAATAGATCAGTTAGTTTCATTGTATGAAGCACTTGGGCAACAATATAAGTGGTCTTCTGCAGTTAAGAGAATACCCCTGGATTTTTTACAAGGTGACAAATTTCGAGAAGCAGCAGAAAATTATATTAGGCCTCTCTTAACTAAGGGAGTTCCATCTCTGTTTTCTGATCTTTCTTCTTTGTACAATCATCCTGGGAAGGCTGACATTTTGGAACAACTTATTCTTGAGTTAGAGCATTCAATTAGGACATCAAGCCAATATCCTGGGAGTACGGAGAAAGAACCCCCTTCATCTCTTTTGTGGACTTTGTTTTTCTTGGCTCAGCATTATGACAGGCTTGGCCAATATGCGATTTCTCTTTCTAAAATCGACGAGGCTATAGAACACACACCTACTGTCATTGATCTATATTCTGTTAAGAGTCGGATATTGAAGCATGCTGGTGATTTGAATGCTGCTGCTGCATTTGCAGATGAAGCAAGACATATGGATCTTGCTGACCGTTATGTTAATAGTGAATGTGTTAAGCGGATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAGTTGCTGTGTTGTTCTCAAAAGATGGAGATCAGCATAACAACCTTCATGATATGCAATGCATGTGGTATGAGCTTGCCTCAGGTGAAAGCTTTTTCCGCCAAGGCAATCTTGGGCGGGCTCTCAAAAAATTCTTAGCAGTGGAGAAGCATTATGCCGATATTATTGAGGACCAATTTGACTTTCATTCATATTGCTTAAGGAAAATGACTTTGCGTACTTACGTTGAAATGCTTAAATTTCAAGACCAATTGCACTCACATGCATATTTTCATAAAGCAGCAGCAGGGGCTATCAAATCTTATATTAAGTTGCATGATTTTCCATCAAAGTCTACCACAGAGGAAGATGAGCATATGTCAAACTTGCTTCCTTCTCAAAAAAAGAAATTGCGACAAAAGCAAAGAAAGGCAGAAGCAAAAGCTAAGAAAGAGGCAGAAGAAAAGAATGAAGAATTAAATTCTAGCACTGTATCAAAGTCTGGGAAGCGGAATGTAAAACCTGTTGATCCTGATCCACATGGGGAAAAGTTATTGCAGGTTGAAGATCCACTGTCTGAAGCTGTTAAATACTTGAAGTTGCTGCAGAAGAATTCACCTGATTCATTGGAAACACATTTGCTCTCTTTTGAATTATATACTAGAAAACAGAAGATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTGCTGAGATTGGATGCTGATCACCCTGATTCTCATCGTTGCTTGATTAAATTTTTCCATCAATTTGGATCCATGGGTACTCCTGTGACTGAAAGAGAGAAACTGATATGGAGTGTCTTAGAAGCTGAGCGCCCAACTATTAGTCAACTGCATGAGAAATCTCTTTTTGACGCAAACAATGCTTTCCTTGACAATCATAAAGATTCTTTGATGCATATAGCAGCTTTTACGGAAATCTTGTACATTTTAGATTCTAACAGAAAATCTGAGGCTGTCAAGTTGATTGAAGAGTCAGCAAATAATATTGTGCCTAGAAATGAAGCAATCAGACCAATTGGAAAGTGGAAACTTAAAGACTGTATTGCAGTTCACAAGCTTCTTGGAACAGTACTTGTTGACCAAGATGCGGCATTGAGGTGGAAAGTGCGGTGTGCAGAGTATTTCCCTTATTCAACTTACTTTGAGGGAAACCACAGCTCTGCCTCTCCCAATTCGGCCTTTAATCAGTTACGCAATAACTCTGAAAATGTTAGTCCTAACCATGCAGTTGATAATCAAAATGTGGGCTCTGCCACATCGAATGGCAAAGCATTTGAAAATCTCACTATCTGA 2559 0.3923 MKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRLNWIGFSVAHHLNSNASKAVEILEAYEGTLENDYPPDNERGEHGEMILYKISLLEECGFLDKALEELRQSESKIVDKLAFKEQEVSLVVKLGHLEEAESLYRILLSMNPDDYSYYEGLQKCVGLYLEDGKYSADQIDQLVSLYEALGQQYKWSSAVKRIPLDFLQGDKFREAAENYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEHSIRTSSQYPGSTEKEPPSSLLWTLFFLAQHYDRLGQYAISLSKIDEAIEHTPTVIDLYSVKSRILKHAGDLNAAAAFADEARHMDLADRYVNSECVKRMLQADQVALAEKVAVLFSKDGDQHNNLHDMQCMWYELASGESFFRQGNLGRALKKFLAVEKHYADIIEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIKSYIKLHDFPSKSTTEEDEHMSNLLPSQKKKLRQKQRKAEAKAKKEAEEKNEELNSSTVSKSGKRNVKPVDPDPHGEKLLQVEDPLSEAVKYLKLLQKNSPDSLETHLLSFELYTRKQKILLAFQAVKQLLRLDADHPDSHRCLIKFFHQFGSMGTPVTEREKLIWSVLEAERPTISQLHEKSLFDANNAFLDNHKDSLMHIAAFTEILYILDSNRKSEAVKLIEESANNIVPRNEAIRPIGKWKLKDCIAVHKLLGTVLVDQDAALRWKVRCAEYFPYSTYFEGNHSSASPNSAFNQLRNNSENVSPNHAVDNQNVGSATSNGKAFENLTI 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00339 852 PIRSF NAT_A 1 771 IPR021183 -
Vivi5g00339 852 Pfam N-terminal acetyltransferase A, auxiliary subunit 140 649 IPR021183 -
Vivi5g00339 852 Coils Coil 162 182 - -
Vivi5g00339 852 SMART tpr_5 333 366 IPR019734 GO:0005515
Vivi5g00339 852 SMART tpr_5 30 63 IPR019734 GO:0005515
Vivi5g00339 852 Coils Coil 549 577 - -
Vivi5g00339 852 MobiDBLite consensus disorder prediction 534 598 - -
Vivi5g00339 852 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 779 - -
Vivi5g00339 852 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 458 678 - -
Vivi5g00339 852 MobiDBLite consensus disorder prediction 559 575 - -
Vivi5g00339 852 Gene3D - 458 676 - -
Vivi5g00339 852 SUPERFAMILY TPR-like 2 215 IPR011990 GO:0005515
Vivi5g00339 852 SUPERFAMILY TPR-like 188 404 IPR011990 GO:0005515
Vivi5g00339 852 ProSiteProfiles TPR repeat profile. 30 63 IPR019734 GO:0005515
Vivi5g00339 852 FunFam N-terminal acetyltransferase A, auxiliary subunit 1 456 - -
Vivi5g00339 852 Pfam TPR repeat 37 76 - -
Vivi5g00339 852 Gene3D - 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00339 Vivi-Chr5 4522678 4536573 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00339 K20792 - gmx:100820094 1465.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00339 5 4522678 4536573 Vivi5g00339 5 4522678 4536573 ECH
Vivi2g07848 2 227168682 227181398 Vivi5g00339 5 4522678 4536573 PCT