Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00318 ATGAAGAACCAATCTTCTACAGAACAATCCAATTTCCATCCAAAATCACCATCAAATTTCACCTCAGAATGCTGGTTCGACGATGCGTGCATTCTAGACATGGATTACTTTGTGAAAACACTTTCTGGAATCAAAGCAAAAGGCGTTCGGGCCGATTTAATCGGTTCCATTATCACACACTATGCCTCCAAATGGCTACCTGACTTAGCTGAAAAGGGTGTAACACAATTTGAAGATACATCGTCATCGCCCGAGAGTGTAACAGCTTTATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTTAATGTTCTACCACCAGAGAAAGACTCAATTCCATGTAACTTCTTGCTTAGGCTATTGAGAACTGCTAATATGGTTGGTGTGGATGGAAGCTATAGACAAGAGCTTGAGAAGAGAATTTCGTGGCAGTTAGATCAAGCTTGTTTGAAAGAACTTGTTATACCTTCTTTTAGTCACACTTGTGGAACACTTTTGGATTTTGAACTTGTGATTAGGCTTGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTCTTATCTTGCTGAAGCTGCTGTTGATGCTAACTTGAGTTTGGATGAGTTTGTTACTCTTGCTGGTTCTCTTCCAAGTCATGCTAGAAATACTGATGATGGTTTGTATAGAGCCATTGATACTTACCTAAAAGCTCATCCAAGTGTGTCAAAGCAAGAAAGGAAAGGTCTATGCAGACTAATAGATTGCAGGAAACTAACACAAGAGGCATCACTTCATGCAGCGCAAAACGAACGGTTTCCGGTGAGAGCAGTAATTCAAGTCCTTCTTTCTGAACAAACAAAGCTCAACAGACACAACAACAGTCACAACATTGATTGGAGTGGATCCATAATGAGTATAACCAGAAGTCCAACAAATGGATTTGGACTCGAGGCAGTTCCAACGGCAAGGTGTTTATCGAAGCGCGAAATGAATGCTCAGCATGTTGAGATAAAGAAACTGAGGGAAGATGTCCATAGGCTGCAGAATCAGTGCAATGCAATGCAGGCTCAGATGGAGAGAATGGTTGAGAAGAAGAAAGGGTTTTTTAAATGGAGTAAGAGGTTTGGAGTGAGTGGTTTTGGTAAAGGAGAGAGTGGATTGGAAGGAAGAAAAGGAGGAGGAGATGGTGGTGTTGATGGTGATGGTCAGGTTGAGTTTGGAAGACAGACACCTGCTGCTAGTTCTGATATGAAAACTAGGTTGGTTAATGTCAAAGGTAGGACTACTCCTAATAGGTGGAGGAAATCTTTATCTTGA 1341 0.4087 MKNQSSTEQSNFHPKSPSNFTSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLAEKGVTQFEDTSSSPESVTALWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDSYLAEAAVDANLSLDEFVTLAGSLPSHARNTDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHNNSHNIDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNAQHVEIKKLREDVHRLQNQCNAMQAQMERMVEKKKGFFKWSKRFGVSGFGKGESGLEGRKGGGDGGVDGDGQVEFGRQTPAASSDMKTRLVNVKGRTTPNRWRKSLS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00318 446 Pfam NPH3 family 24 271 IPR027356 -
Vivi5g00318 446 Coils Coil 338 372 - -
Vivi5g00318 446 MobiDBLite consensus disorder prediction 390 446 - -
Vivi5g00318 446 PANTHER OS12G0117600 PROTEIN 22 378 IPR043454 -
Vivi5g00318 446 MobiDBLite consensus disorder prediction 416 446 - -
Vivi5g00318 446 ProSiteProfiles NPH3 domain profile. 23 295 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00318 Vivi-Chr5 4145217 4153670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00318 22 370 EF-hand Containing Proteins AT3G44820 33.684 1.59e-55 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00318 - - cam:101500573 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00318 5 4145217 4153670 Vivi5g00318 5 4145217 4153670 ECH
Vivi2g07832 2 226519253 226521433 Vivi5g00318 5 4145217 4153670 PCT