Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00288 ATGAAGGCCATGGAAGCCTTACACTTACGGTGCATGCTTCCACTATCCATCACCAAAAAAACTCTCTTTTCCCACAAAACACCAACCCCATTATCATCAATTTCAAACCCACAATTCAGTTTAACCTTATCTTCATCTTCTTCTCAAACTGCTACTGTCAGAACAAGAGCAGGTTGGTTTCTGGGTCTTACAAAAGACAATAGCAACAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCTGTTCTTCATGAGCCTGCTCAAGAAGTTGATCCTAGTGAGATTAAGTCTGAGAAAGTGCAGAAGATTATTGATGATATGATTAGGGTCATGAGGAAGGCTCCTGGTGTTGGTTTAGCTGCTCCTCAGATTGGAGTTGCTTCTAGGATAATTGTTTTGGAAGATACCAAAGAATATATTAGCTATGCACCAAAGGAAGAGACCAAAGCTCAAGATAGAAGACCTTTTGATCTTTTGGTGATCCTGAACCCCAAGCTGAAGAATAAGAGCAACAAGACTGCCCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGATTTAGAGCTGTGGTGGAGCGATACCTTGACGTTGAAGTTACGGGGTTGGATCGTAATGGCGAACCAATCAAAATAACTGCCTCTGGTTGGCAGGCCCGCGTTTTACAGCATGAATGTGATCACTTGGAGGGAACTCTATATGTCGATAAAATGGTACCTAGAACTTTCAGAACCGTAGAAAATTTGGATCTGCCTCTTGCTCAAGGGTGCCCGAAACTTGGCCCTTGGTAA 792 0.4242 MKAMEALHLRCMLPLSITKKTLFSHKTPTPLSSISNPQFSLTLSSSSSQTATVRTRAGWFLGLTKDNSNKKMNLPDTVKAGDPVLHEPAQEVDPSEIKSEKVQKIIDDMIRVMRKAPGVGLAAPQIGVASRIIVLEDTKEYISYAPKEETKAQDRRPFDLLVILNPKLKNKSNKTALFFEGCLSVDGFRAVVERYLDVEVTGLDRNGEPIKITASGWQARVLQHECDHLEGTLYVDKMVPRTFRTVENLDLPLAQGCPKLGPW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00288 263 PANTHER PEPTIDE DEFORMYLASE 68 257 IPR023635 GO:0042586
Vivi5g00288 263 CDD Pep_deformylase 78 234 IPR023635 GO:0042586
Vivi5g00288 263 Gene3D Peptide deformylase 72 261 IPR036821 -
Vivi5g00288 263 NCBIfam peptide deformylase 78 241 IPR023635 GO:0042586
Vivi5g00288 263 SUPERFAMILY Peptide deformylase 70 246 IPR036821 -
Vivi5g00288 263 PRINTS Peptide deformylase signature 180 191 IPR023635 GO:0042586
Vivi5g00288 263 PRINTS Peptide deformylase signature 192 210 IPR023635 GO:0042586
Vivi5g00288 263 PRINTS Peptide deformylase signature 107 136 IPR023635 GO:0042586
Vivi5g00288 263 PRINTS Peptide deformylase signature 211 240 IPR023635 GO:0042586
Vivi5g00288 263 FunFam Peptide deformylase 74 257 - -
Vivi5g00288 263 Hamap Peptide deformylase [def]. 73 249 IPR023635 GO:0042586
Vivi5g00288 263 Pfam Polypeptide deformylase 78 241 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00288 Vivi-Chr5 3668384 3670839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00288 K01462 - gmx:100784292 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00288 5 3668384 3670839 Vivi5g00288 5 3668384 3670839 ECH
Vivi2g07808 2 226106943 226109401 Vivi5g00288 5 3668384 3670839 PCT