Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07808 ATGGCAGCGGCGCGGCGGGTGGTGTCGCGGTTGCGCGTCGCTCCGATGATGGCGCTCTCCAACACCATGGCTACATCCTTATCTTCTAGCTGTAATACCGAAACTCCATCACTGAGTACCAAATGTTTGAGGTTTAGTTCATCATCATCACCTTCTTCAAAATCAACATTACTAGGGTGGAACAAAACAGCGAACAAATTACCCTCCATTGTAAAAGCCGGAGAACCAGTTCTACACGAGCCTGCGCGTGAGGTTGATCCAAATGAGATTAAATCAGAGAAAATTCAGAGTATAATCGATGACATGATTCGTGTCATGAGAAAAGCTCCTGGAGTTGGTCTTGCTGCCCCACAAATTGGTATCCCTTTAAGGATAATTGTTTTGGAAGATAAAGAAGAATATATTAGTTACAACACAGAGGAGGAGACCAAATTACAAGATAGAAGACCTTTTGATCTTTTGGTGATTCTGAATCCCAAGCTAAAGAACAAGAGCAACAGGACTGCCTTCTTTTTTGAAGGCTGCTTGAGTGTTGATCGATATCAAGCTATGGTAGAGCGGTATCTTGATGTTGAGGTTGCAGGTTTTGATCGTCATGGCAATCCAATCAAAATAAAAGCTTCTGGATGGCAGGCTCGGATTTTACAGCACGAGTGCGATCACTTAGATGGAACACTATATGTAGATAAGATGGTCCCTAAAACTTTTAGAAATTGGAAAAACGTGGATCTGCCTCTTGCCCGTGGGTGCCCCAAACTTGGCCCCCGAGCTTAA 774 0.4393 MAAARRVVSRLRVAPMMALSNTMATSLSSSCNTETPSLSTKCLRFSSSSSPSSKSTLLGWNKTANKLPSIVKAGEPVLHEPAREVDPNEIKSEKIQSIIDDMIRVMRKAPGVGLAAPQIGIPLRIIVLEDKEEYISYNTEEETKLQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRYQAMVERYLDVEVAGFDRHGNPIKIKASGWQARILQHECDHLDGTLYVDKMVPKTFRNWKNVDLPLARGCPKLGPRA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07808 257 FunFam Peptide deformylase 67 250 - -
Vivi2g07808 257 PANTHER PEPTIDE DEFORMYLASE 62 249 IPR023635 GO:0042586
Vivi2g07808 257 CDD Pep_deformylase 70 227 IPR023635 GO:0042586
Vivi2g07808 257 SUPERFAMILY Peptide deformylase 66 239 IPR036821 -
Vivi2g07808 257 Pfam Polypeptide deformylase 69 234 IPR023635 GO:0042586
Vivi2g07808 257 NCBIfam peptide deformylase 70 235 IPR023635 GO:0042586
Vivi2g07808 257 PRINTS Peptide deformylase signature 204 233 IPR023635 GO:0042586
Vivi2g07808 257 PRINTS Peptide deformylase signature 173 184 IPR023635 GO:0042586
Vivi2g07808 257 PRINTS Peptide deformylase signature 185 203 IPR023635 GO:0042586
Vivi2g07808 257 PRINTS Peptide deformylase signature 100 129 IPR023635 GO:0042586
Vivi2g07808 257 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vivi2g07808 257 Hamap Peptide deformylase [def]. 66 242 IPR023635 GO:0042586
Vivi2g07808 257 Gene3D Peptide deformylase 66 256 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07808 Vivi-Chr2 226106943 226109401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07808 K01462 - csv:101216450 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07808 2 226106943 226109401 Vivi2g07808 2 226106943 226109401 ECH
Vivi2g07808 2 226106943 226109401 Vivi5g00288 5 3668384 3670839 PCT