Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00237 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTTGAAGAACTTCCTCCGTCTCCGCCGTTGTCGAAGAGGCTTCGTTGTTCATCTGCTACTTCTCCGATTCGTTTTCCGACTCCATCACTCTTTGATCAGCTTCGTAATCTCTTCCCTCACATGGACCAACAGGTTCTTGAGAGAGCTCTTCAAGAAAGTGACAATGATCTAGATGCTGCCATCAAGAGCCTGAATGAGCTTTACTTGGGAGCTGGGGGTGGGAATTTTGGAACTGCTGAAGAATCCGAGATTGATGTCAGTGGGGATCAAGGTAAACTGGAAGATGATGTGAATGAGTCTGCTTCTCAGAATCAGTCTACTTTGAACAACCTTCCTGCAGACGGAGCAGAATGGATTGACTTTTTTGTTCGAGAAATGATGGTTGCTACCAGTGTTGATGATGCGAGAGCCCGTGCTGCTAGAATGCTGGAGGTTCTAGAGAAATCAATCAGTGAACGAGCAAAGGCTGAGGCAACAGACTCTCTTCAGAAGGAAAACTTGATGCTGAAGCAGCAAATTGAAGTGCTGATTAAGGAAAAAAATTCTTTTAAAAACGCATTCAGGATTCAGCACGAACGCCTTGCTGATTATGATAATAAGAATCAAGAATTGCAGCAGTTGAAGCAGTTGGCGTCTCAATACCAGGAACAGATCAGAACTCTTGAGATGAATAACTATGCATTGGGAATGCATTTGAGGCAGGCTCAGCAGAGCAATGGATTTCAAGGGAACTTCCCACCCGATGTCTTCTAA 789 0.4474 MSAAVCGSKRSFFEELPPSPPLSKRLRCSSATSPIRFPTPSLFDQLRNLFPHMDQQVLERALQESDNDLDAAIKSLNELYLGAGGGNFGTAEESEIDVSGDQGKLEDDVNESASQNQSTLNNLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAEATDSLQKENLMLKQQIEVLIKEKNSFKNAFRIQHERLADYDNKNQELQQLKQLASQYQEQIRTLEMNNYALGMHLRQAQQSNGFQGNFPPDVF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00237 262 CDD CUE 41 76 - -
Vivi5g00237 262 Coils Coil 209 236 - -
Vivi5g00237 262 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 262 - -
Vivi5g00237 262 MobiDBLite consensus disorder prediction 91 121 - -
Vivi5g00237 262 Pfam CUE domain 41 78 IPR003892 GO:0043130
Vivi5g00237 262 Gene3D - 39 81 - -
Vivi5g00237 262 SMART cue_7 38 80 IPR003892 GO:0043130
Vivi5g00237 262 ProSiteProfiles CUE domain profile. 38 81 IPR003892 GO:0043130
Vivi5g00237 262 Coils Coil 171 191 - -
Vivi5g00237 262 SUPERFAMILY UBA-like 41 83 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00237 Vivi-Chr5 2876076 2880770 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00237 - - gmx:100813137 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00237 5 2876076 2880770 Vivi5g00237 5 2876076 2880770 ECH
Vivi2g07728 2 225011294 225014761 Vivi5g00237 5 2876076 2880770 PCT