Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00233 ATGGTTCTCGCACAGTTAGGTGGGAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCCACAATCATCGATGAAAAAGTTCTCAACGAATGCCTCAATGAAATCACCCGCGCTCTTCTTCAATCCGATGTCCAATTCAAGCTCGTCCGTGATATGCAGACCAATATCAAGAAGATTGTCAATCTCGATGATCTCGCTGCTGGTCATAACAAACGCAGAATCATCCAACAAGCTGTGTTCAATGAACTCTGCAATATCTTGGATCCTGGAAAGCCCTCTTTTGCTCCCAAAAAAGGAAAAGCTAGTGTTGTCATGTTCGTTGGTTTACAAGGATCTGGGAAAACCACTACCTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCTGATACATTCAGAGCTGGTGCGTTTGATCAGTTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAGGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGTCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATCATCACTAAAATGGATGGTCATGCAAAGGGTGGTGGCGCACTTAGTGCTGTTGCTGCTACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTCGAAGTTTTCGATGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGACTTGTCTGGGTTCATGGACAAAATCCATGAAGTTGTCCCTATGGATCAACAACCGGAACTGCTTCAAATGCTGTCAGAAGGACACTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAAATGGGTCCTATTGGCCAGGTTTTTTCTATGCTACCGGGATTTAGTTCTGAGTTAATGCCAAAAGGCCGTGAGAAGGAAAGCCAGGCAAAGATTAAGCGTTACATGACAATGATGGACTCAATGACAAATAAAGAGTTAGATAGTTCAGACCCAAAGCTCATGAATGAGTCTAGAATGATGCGAATAGCTCGAGGTTCTGGTCGGCAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAGATGAAAGGGCTTAAAATACCAAAGAAGGGAGAAATGAGTGCCTTATCCCGAAATATGAATGCCAACCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGTATGGGTGGATTACAAAGCTTGATGAAACAGATGGGATCTTCTAAGGATATGATGGGAATGTTTGGCGGTGGCGATAAGTAG 1488 0.4247 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCNILDPGKPSFAPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFRKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIHEVVPMDQQPELLQMLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNKELDSSDPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNANHMSKILPPQMLKQIGGMGGLQSLMKQMGSSKDMMGMFGGGDK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00233 495 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi5g00233 495 FunFam Signal recognition particle 54 kDa protein 311 451 - -
Vivi5g00233 495 NCBIfam signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Vivi5g00233 495 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 483 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi5g00233 495 Gene3D - 5 306 IPR042101 -
Vivi5g00233 495 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Vivi5g00233 495 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Vivi5g00233 495 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Vivi5g00233 495 CDD SRP54_G 102 294 - -
Vivi5g00233 495 Gene3D - 91 285 IPR027417 -
Vivi5g00233 495 Gene3D - 312 436 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi5g00233 495 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 93 IPR036225 -
Vivi5g00233 495 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi5g00233 495 Pfam Signal peptide binding domain 328 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vivi5g00233 495 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Vivi5g00233 495 FunFam Signal recognition particle GTPase 5 97 - -
Vivi5g00233 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Vivi5g00233 495 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
Vivi5g00233 495 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Vivi5g00233 495 SMART AAA_5 100 277 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00233 Vivi-Chr5 2864644 2869288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00233 K03106 - aew:130796089 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00233 5 2864644 2869288 Vivi5g00233 5 2864644 2869288 ECH
Vivi2g07731 2 225033854 225038472 Vivi5g00233 5 2864644 2869288 PCT