Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07731 ATGGTTCTAGCGCAGCTAGGAGGGAGCATTTCCCGTGCTCTCCAGCAGATGAACAATGCCACGGTGATCGACGAGAAAGTCCTCAACGAATGTCTCAATGAAATCACCCGAGCTCTCCTTCAATCCGATGTCCAATTCAAGCTCGTTCGAGACATGCAGACCAACATCAAGAAGATCGTCAATCTCCAAGACCTCGCCGCCGGTCACAACAAACGCAAAATCATCCAACAAGCTGTGTTTAGCGAACTCTGCAAAATGTTGGATCCTGGAAAGTCCTCTTTTGTTCCCCAAAAAGGAAAACCAAGTGTTGTCATGTTTGTTGGTTTACAAGGTTCTGGAAAAACTACAACATGTACGAAATATGCGCATCATTATCAGAAGAAAGGATGGAAGCCAGCTTTAGTGTGTGCAGATACATTTAGAGCGGGAGCATTTGATCAATTGAAGCAAAATGCAACTAAGGCTAAGATCCCTTTTTATGGAAGCTATCAGGAGTCAGACCCTGTCAAAATTGCCGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACTGTGATCTTATAATTGTTGATACCAGTGGGCGGCACAAACAAGAAGTAGCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCTGTTGGAGCTGTAATTATCACCAAAATGGATGGCCATGCCAAGGGTGGTGGCTCTCTTAGCGCTGTAGCAGCAACAAAGAGTCCTGTCATATTCATAGGAACTGGTGAACATATGGACGAGTTTGAAGTTTTTGAAGCTAAACCATTTGTTAGACGTCTATTAGGCATGGGTGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTTGTTCCAACGGATCAACAGCCTGAATTGGTTCAAAAGCTGTTAGAAGGGAACTTCACCTTGAGGCTTATGTATGAGCAATTTCAGAACTTCCTTCAATTGGGTCCTACCAGCCAGGTAGTTTCTATGCTTCCAGGAGTTCCTTCTGAGTTAATGTCAAAAGGCTGCGACCAGGCAAAATTTAAGCGTTACATGACAATAATGGATTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTTATGAATGAATCACGTATGATGCGAATAGCCCGAGGTGCAGGTCGTCAAGTTAGGGAAGTGTTGGACATGATGGAAGTGTACAAACGTTTTGCAAAGACATTTAAAACCACAATGAAAGGGCTTAACATACCAAAGAATGGTAACAAGAGTGCCCTATCTCGAAAAATGAATGCACAAAACATGGGCAAAGCCTTCCCTCCACAGTTGCTCAACCAAATTGGTGGCATGGGCGGGTTACAAAACTTAATGAAGCAGATGGGAACTTCTAAAGACATGATGGGAATGTTTAGTGGTGGCGGTAAATAG 1482 0.4312 MVLAQLGGSISRALQQMNNATVIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLQDLAAGHNKRKIIQQAVFSELCKMLDPGKSSFVPQKGKPSVVMFVGLQGSGKTTTCTKYAHHYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYQESDPVKIAVEGVERFKEENCDLIIVDTSGRHKQEVALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDEFEVFEAKPFVRRLLGMGDWSGFMDKIHEVVPTDQQPELVQKLLEGNFTLRLMYEQFQNFLQLGPTSQVVSMLPGVPSELMSKGCDQAKFKRYMTIMDSMTNEELDSSNPKLMNESRMMRIARGAGRQVREVLDMMEVYKRFAKTFKTTMKGLNIPKNGNKSALSRKMNAQNMGKAFPPQLLNQIGGMGGLQNLMKQMGTSKDMMGMFSGGGK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07731 493 Gene3D - 91 285 IPR027417 -
Vivi2g07731 493 Pfam SRP54-type protein, GTPase domain 101 296 IPR000897 GO:0005525|GO:0006614
Vivi2g07731 493 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Vivi2g07731 493 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Vivi2g07731 493 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 484 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi2g07731 493 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 475 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vivi2g07731 493 Pfam Signal peptide binding domain 327 425 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vivi2g07731 493 SUPERFAMILY Signal peptide-binding domain 298 427 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi2g07731 493 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Vivi2g07731 493 CDD SRP54_G 102 294 - -
Vivi2g07731 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Vivi2g07731 493 Gene3D - 311 455 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vivi2g07731 493 Gene3D - 5 306 IPR042101 -
Vivi2g07731 493 FunFam Signal recognition particle GTPase 5 97 - -
Vivi2g07731 493 NCBIfam signal recognition particle protein SRP54 2 424 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Vivi2g07731 493 SMART AAA_5 100 277 IPR003593 GO:0016887
Vivi2g07731 493 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Vivi2g07731 493 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Vivi2g07731 493 FunFam Signal recognition particle 54 kDa subunit 91 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07731 Vivi-Chr2 225033854 225038472 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07731 K03106 - qsa:O6P43_027889 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07731 2 225033854 225038472 Vivi2g07731 2 225033854 225038472 ECH
Vivi2g07731 2 225033854 225038472 Vivi5g00233 5 2864644 2869288 PCT