Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05713 ATGCATAAGGAATCTAAAAGAAAAATCTATCACGAACCGAGAAAACCGTTGTTTTTTCCCCCAAAGTTTCTCTCAGATCACAGAAACGATCGTGAAATGGCGAAATCCAGCGCCGACGATGCTGAACTCCGGCGAGCTTGCATCTCCGCAATTGAAGATCCTAAGCAGAAGATCATCTTATCGCTCCGTGTCGCCAAGAGTCACGGGATCTTGGGAAAATCTTCCAAGCTTGGTCGTCAAATGGCCAAGCCTAGGGTTCTTGCTCTCTCCACATTAACAAAGGGTCAGACAACTACGGCTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAACTATACAAGCTAAAGCATCTCTCAAAAGTAGAAGTTTTAACAAATGATCCCAGTGGATGTACATTTACATTGGGATTTGATAACCTTAGAAGCCAGAGTGTAGCTCCTCCGCAATGGACAATGCGCAATATTGATGACAGGAATCGTCTTCTTCTTTGCATCTTGACCATGTGTAAAGATGTTTTGGGTCGCCTACCTAAAGTCGTTGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATAGAGCCCCTGTATCGACTCAGAGTAATGTGCAAGATGGTGGCCCTGTTGCTTCCACTATGACTGAGAGAGAGTTGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAGGAGGAAGACATGGAGGACATGGAGGCTCTTTTGGGAACTTATGTGATGGGTGTTGGTGAAGCAGAAGAATTTTCTGAAAGACTTAAGAGAGAGCTCCAGGCTTTGGAAGCAGCAAATGTACACGCCATTTTAGAAAGCGAGCCTTTGATTAATGAGGTGTTGTATGGGCTTGAAGCAGCAACAAATTGTGTAGAAGATATGGATGAATGGTTAGGCACATTCAATGTAAAACTCCGGCACATGAGAGAGGATATTGCATCGATAGAAACCCGTAATAACAGCTTGCAAATGCAGTCGGTAAATAACAAATCTCTCATTGAGGAGCTCGATACACTCCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCAGCATGTTTGACAGGAGGTTCATTTGATGAAGATCGGATGCTGCAAAATGTAGAGGCATGTGAATGGCTGACTAGTGCCTTGCGTGGTCTTGAAGTGCCCAATATTGACCCTACTTATGCAAACATGAAAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGCTACTTTTCTCAGCGGGGACAGTTGAAGAGGCCTGATCATGCTGACCTGCGCTACAAGTGCCGAACATATGCTCGTCTTCTTCAACATTTGAAGAGTCTTGACAAGAATTGCTTGGGTCCACTAAGAAAAGCTTATTGCAGTTCTTTAAACTTGCTTCTTCGCCGCGAGGCCCGGGAGTTTGCAAATGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACCGTTTGGCTTGAAGGTTCAACTGGTTCTGGTCAGAATGTGAATGCTACTGATACTTCTACAGTCTCTGATGCATATGCAAAAATGCTCACAATATTTATCCCACTTCTGGTGGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCGACACTTGTTCCTCCCGGAGGTGTTGTTAACGGCAATAAAGCTGGTTATGACGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGTAAATCTGGAAAAAATTCTGCGGAACTTGCAGCTTTAAATGAATCACTTCAGGATTTACTAGATGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCGATGCATGGAATAACAGAACGTTATCTTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTGCGTCTTTTGCTTGGCGACCTAGAGTCTCGGATATCTATGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATCGGTGTCCTATCCTACATTCCCAGATTTGCAATCCTTGCAACTCGTATGGAGCAGTATATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATATACGAAATTCGTTAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCCAAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCCGCCTTTCAGAATAGTTTGTATGACCTAGCCAACATCGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACACGCCATATTAGCATGATTATATACATTCAATTTGAACGCCTTTTCCTGTTTGCTCGAAGGATTGAAGACTTGATGTTCACTGTTGCACCCGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGGAAAATGTTAAAATCCAGCTTATCTGGGGTTGACAAGTCCATTAATGCAATGTATAAGAAACTACAAAAGAATTTGACTTCAGAAGAACTGCTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGACAAGTATGAAAGTTTTGCTCAACTTGTTGCCAAGATTTACCCTAATGAGACAATCCCATCTGTTGCAGAGATGAAAGACCTTTTAGGTAATAGCTAA 2757 0.4218 MHKESKRKIYHEPRKPLFFPPKFLSDHRNDREMAKSSADDAELRRACISAIEDPKQKIILSLRVAKSHGILGKSSKLGRQMAKPRVLALSTLTKGQTTTAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILTMCKDVLGRLPKVVGIDVVEMALWAKENRAPVSTQSNVQDGGPVASTMTERELKVNVEKDLVSQAEEEDMEDMEALLGTYVMGVGEAEEFSERLKRELQALEAANVHAILESEPLINEVLYGLEAATNCVEDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDTLLERLRVPSEYAACLTGGSFDEDRMLQNVEACEWLTSALRGLEVPNIDPTYANMKAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKAGYDDDDDLGIMDIDENDSKSGKNSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQIGVLSYIPRFAILATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYIQFERLFLFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETIPSVAEMKDLLGNS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05713 918 Pfam Exocyst complex component Sec3 612 902 IPR019160 GO:0000145|GO:0006887
Vivi4g05713 918 Pfam Exocyst complex component Sec3 259 520 IPR019160 GO:0000145|GO:0006887
Vivi4g05713 918 Coils Coil 316 336 - -
Vivi4g05713 918 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 81 176 IPR028258 -
Vivi4g05713 918 Coils Coil 256 283 - -
Vivi4g05713 918 SMART Sec3_PIP2_bind_2 80 178 IPR028258 -
Vivi4g05713 918 PANTHER SEC3/SYNTAXIN-RELATED 81 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05713 Vivi-Chr4 193515932 193537611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05713 33 917 EF-hand Containing Proteins AT1G47550 84.512 0.0 1555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05713 K19983 - gmx:100784141 1577.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05713 4 193515932 193537611 Vivi4g05713 4 193515932 193537611 ECH
Vivi4g05713 4 193515932 193537611 Vivi3g00362 3 6357912 6387226 PCT