Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05562 ATGAAGCCAGCATTTGCAGCTCTTCTACTTGTGTGTCTTATCCTCTGCTCATCTATGTTTGAAATCTCAGCACTTGGTGTTGGTAGTTTCTGTTCGGCGAAATGCGGGCAAAGGTGTTCGAAAGCTGGGAGGAGAGACAGATGCTTGAATTTCTGTGGAATATGTTGCAATAAGTGTAAGTGTGTGCCATCAGGAACATATGGTAACAAACATGAGTGTCCTTGTTACAGAGACATGAGGAACTCAAAGGGAACCCCAAAATGTCCTTAA 270 0.4333 MKPAFAALLLVCLILCSSMFEISALGVGSFCSAKCGQRCSKAGRRDRCLNFCGICCNKCKCVPSGTYGNKHECPCYRDMRNSKGTPKCP 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05562 89 Pfam Gibberellin regulated protein 30 89 IPR003854 -
Vivi4g05562 89 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 8 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05562 Vivi-Chr4 190934367 190935187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05562 - - gmx:100500113 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05562 4 190934367 190935187 Vivi1g03906 1 82525726 82526436 ECH
Vivi4g05562 4 190934367 190935187 Vivi4g05562 4 190934367 190935187 ECH
Vivi4g05562 4 190934367 190935187 Vivi3g01838 3 29732743 29733679 PCT