Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05141 ATGCTGTGTCATTTGGTTCCGTTGCCGCGGAAGAAAAAACCCGGTTCGGTTCCGGTTTACCTCAACGTTTACGATCTAACCCCAATGAATGGTTACGCTTATTGGTTCGGTCTTGGAGTTTATCATTCTGGCGTTCAAGTTCATGGTGTTGAATATGGATTTGGAGCACATGAGCGTGAAACTACTGGGATTTTTGAAGTGGAGCCTGGGCACTGTCCTGGATTCACGTTTAGGAAATCGGTTTATATTGGATCGACGGATCTGGGACCGAATGAGGTTCGGGAGTTTATGGAAAAGCTATCTCAAGAGTATGCTGGGAATACCTACCATCTTATACAGAAGAATTGCAACCATTTCTGTAATGATGTTTGTGTGAAGTTGACTGGGAAATCGATTCCACGGTGGGTTAATAGACTCGCTCGGCTTGGTTTTCTCTGCAACTGCGTTCTTCCAACCAGCCTAAATGAGACAAAGGTTGGACAAGTTTCGTTAGACAGGATTCAGGAAGGAGAAAGTAAGAAAATGAGAAGTCAGTCCCGCAGGCAGGAGGCTCCTTCCAATCCTTCATTACCTGCAAACCAAAGACATTGCGGTATCCCATCATCGTCTGTTATTAATGCTTCTTCATCCTCAACCTTAGCAGTAAAATAA 651 0.4439 MLCHLVPLPRKKKPGSVPVYLNVYDLTPMNGYAYWFGLGVYHSGVQVHGVEYGFGAHERETTGIFEVEPGHCPGFTFRKSVYIGSTDLGPNEVREFMEKLSQEYAGNTYHLIQKNCNHFCNDVCVKLTGKSIPRWVNRLARLGFLCNCVLPTSLNETKVGQVSLDRIQEGESKKMRSQSRRQEAPSNPSLPANQRHCGIPSSSVINASSSSTLAVK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05141 216 PANTHER DESUMOYLATING ISOPEPTIDASE 16 187 IPR008580 GO:0008233
Vivi4g05141 216 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Vivi4g05141 216 MobiDBLite consensus disorder prediction 170 216 - -
Vivi4g05141 216 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Vivi4g05141 216 MobiDBLite consensus disorder prediction 181 216 - -
Vivi4g05141 216 Gene3D PPPDE domains 12 174 IPR042266 -
Vivi4g05141 216 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05141 Vivi-Chr4 182709658 182712554 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05141 K22763 - gmx:100786432 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05141 4 182709658 182712554 Vivi3g01439 3 23486933 23489066 PCT