Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05123 ATGTCTTTCATTTCCACTCTCAGAAGATCCATCTCACCCTTCATCTCACACTTTTCAATCCAACGCTTCCAGATCCTCCACCCTTCCACCTCATCGCTTCTCAACTCCCGGAACGGTGTTTTCGCCGTCATTCTCGCCGGCACCAGTCTAGGGTTTCTTCTCTACACCACCGACTTTGATTCAACTCTCTTTCAACCTTCACTCTCTTCTTTTGTTGACTTGTCTACACCGGATTCCGAAGACCAAAATGGATCTCGTTTTTCACCTTCTTCGTTGTTTGCGAAATTGTCACTTCCTGAAACTTCTGGTACCTTCATTTTTGGAGAGGCGTTCAGGAGAAAGGTTTTTTTCAATTATGAGAAGCGCATGCGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAATATTTTGCATCTTATCGATCACCACAAAGAGAAGTACTCATGATGCCGGCAGACCTAATGAGGGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATACTTGATAGGAGAAAGAAGCCCTGGCCATTTATGCTGCTCTCCTTCAGAATTTTTTATGCTTTTCGATCTAAACAATGACGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTAACGCTACTCAGCATCCCAGAATCAAGATTTTCTGTGGCATTTAAAATGTTTGACGTGAACAACAATGGAGAGATAACCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGAACTCATCATCGACAAGGTGCTCAACACAGGAATGGACTGCGAACTGGTCTGAAGGTGAACGATTCTGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTGAAGACGGAAAGGGTTGCCTCCAAATTGATAAATTTGTACAATTTTTGCGAGACTTGCACGAAGAAATGCTGAAGCTGGAGTTTGCTCACTATGACTACAAATCTCGAAAAACAATTTCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCCGCCGACATGAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATGAATTGAATAATAATCCATGCTTTAAGGACATGCGCATCACATTTGAGGACTTCAAAAACTTTGACGAGCTAAGGAAAAAGTTATTTCCATTTTCATTAGCCCTTTTTAGTTTTGGAGAAGTAAACGGCCTGTTGACGAGAGATGATTTTCAGCGAGCAGCGTCACATGTTTGTGGCATTTCTCTCTCGGACAATGTGGTTGAGATTGTTTTTCATTTGTTTGATACAAATCAAGACGGAAACCTGAGTACAGACGAATTTATCAGAGTGCTACACAAACGAGAAAGGGACATCGGACAATCATTGGAAACAGGAATGTTGGGTTTGTTGTCTTCTTGCTGGAACCGAAAACAAAACATCTAA 1407 0.4193 MSFISTLRRSISPFISHFSIQRFQILHPSTSSLLNSRNGVFAVILAGTSLGFLLYTTDFDSTLFQPSLSSFVDLSTPDSEDQNGSRFSPSSLFAKLSLPETSGTFIFGEAFRRKVFFNYEKRMRLRSPPEKVFEYFASYRSPQREVLMMPADLMRAVVPVFPPSESHLVRDGYLIGERSPGHLCCSPSEFFMLFDLNNDGLISFKEYIFFVTLLSIPESRFSVAFKMFDVNNNGEITKEEFKKVMALMRTHHRQGAQHRNGLRTGLKVNDSVENGGLLEYFFGEDGKGCLQIDKFVQFLRDLHEEMLKLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLLERVDELNNNPCFKDMRITFEDFKNFDELRKKLFPFSLALFSFGEVNGLLTRDDFQRAASHVCGISLSDNVVEIVFHLFDTNQDGNLSTDEFIRVLHKRERDIGQSLETGMLGLLSSCWNRKQNI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05123 468 Pfam EF hand 223 247 IPR002048 GO:0005509
Vivi4g05123 468 Gene3D - 173 262 - -
Vivi4g05123 468 Gene3D - 388 452 - -
Vivi4g05123 468 SUPERFAMILY EF-hand 277 441 IPR011992 -
Vivi4g05123 468 CDD EFh 189 246 IPR002048 GO:0005509
Vivi4g05123 468 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Vivi4g05123 468 ProSitePatterns EF-hand calcium-binding domain. 229 241 IPR018247 -
Vivi4g05123 468 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 77 462 IPR039800 GO:0005509|GO:0006851
Vivi4g05123 468 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Vivi4g05123 468 ProSiteProfiles EF-hand calcium-binding domain profile. 216 251 IPR002048 GO:0005509
Vivi4g05123 468 Gene3D - 263 379 - -
Vivi4g05123 468 SUPERFAMILY EF-hand 189 441 IPR011992 -
Vivi4g05123 468 SMART efh_1 220 248 IPR002048 GO:0005509
Vivi4g05123 468 SMART efh_1 414 442 IPR002048 GO:0005509
Vivi4g05123 468 SMART efh_1 186 214 IPR002048 GO:0005509
Vivi4g05123 468 CDD EFh_MICU 220 442 - -
Vivi4g05123 468 Pfam EF-hand domain pair 391 440 IPR002048 GO:0005509
Vivi4g05123 468 Pfam EF-hand domain pair 191 212 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05123 Vivi-Chr4 182394447 182398920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05123 44 407 EF-hand Containing Proteins AT4G32060 66.848 2.56e-172 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05123 K22827 - gmx:100806575 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05123 4 182394447 182398920 Vivi3g01415 3 22989164 22991458 PCT